Ss1.1-reje20b_a14.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGCCCTTCCTTTCTGCGCTCGCGCTCATCGTGGTGACACAAGGCGTGCCTTCAACATG CAGAACGACGCGGGCGAGTTCGTGGACCTATACGTGCCTCGAAAATGCTCCGCCAGCAAC CGCATCATCGGCGCCAAGGACCACGCGTCCATCCAGATGAACGTGGCCGAGGTTGACAAG GTGACAGGCAGGTTCAACGGCCAGTTTAAAACCTACGCCATCTGTGGTGCCATTCGCAGG ATGGGAGAGTCAGACGACTCCATTCTCCGGCTGGCCAAGGCCGACGGCATTGTCTCAAAG AACTTCTGACTGGCGAGGCTCACACATGTGGAATGTTTGTCATAAATAAATAGTGCAAGT CCGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGCCCTTCCTTTCTGCGCTCGCGCTCATCGTGGTGACACAAGGCGTGCCTTCAACATG CAGAACGACGCGGGCGAGTTCGTGGACCTATACGTGCCTCGAAAATGCTCCGCCAGCAAC CGCATCATCGGCGCCAAGGACCACGCGTCCATCCAGATGAACGTGGCCGAGGTTGACAAG GTGACAGGCAGGTTCAACGGCCAGTTTAAAACCTACGCCATCTGTGGTGCCATTCGCAGG ATGGGAGAGTCAGACGACTCCATTCTCCGGCTGGCCAAGGCCGACGGCATTGTCTCAAAG AACTTCTGACTGGCGAGGCTCACACATGTGGAATGTTTGTCATAAATAAATAGTGCAAGT CCGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 162-281, + strand, RNAz p=0.74446 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 162-281, + strand, RNAz p=0.74446 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 3-426, gnl|bosTau2|chr1 (88736786-88737184) | |
| 3-426, gnl|Mm7|chr19 (53167217-53167587) | |
| 53-377, gnl|bosTau2|chr11 (39795984-39796304) | |
| 53-377, gnl|canFam2|chr24 (26413653-26413860) | |
| 53-377, gnl|canFam2|chr4 (27377680-27377894) | |
| 53-377, gnl|dasNov1|scaffold_12360 (14891-14685) | |
| 53-377, gnl|dasNov1|scaffold_2082 (93140-92942) | |
| 53-377, gnl|echTel1|scaffold_264937 (13278-13484) | |
| 53-377, gnl|echTel1|scaffold_298006 (49470-49270) | |
| 53-377, gnl|hg17|chr18 (42556981-42557185) | |
| 53-377, gnl|hg17|chr20 (4942117-4942335) | |
| 53-377, gnl|Hg17|chr4 (15934452-15934134) | |
| 53-377, gnl|loxAfr1|scaffold_87892 (8675-8879) | |
| 53-377, gnl|loxAfr1|scaffold_87892 (8880-8667) | |
| 53-377, gnl|mm7|chr16 (88509825-88509612) | |
| 53-377, gnl|Mm7|chr16 (88509570-88509905) | |
| 53-377, gnl|mm7|chr16_random (3765140-3764931) | |
| 53-377, gnl|monDom2|scaffold_23 (21406129-21405922) | |
| 53-377, gnl|monDom2|scaffold_23 (21405924-21406129) | |
| 53-377, gnl|oryCun1|scaffold_197049 (20013-19806) | |
| 53-377, gnl|oryCun1|scaffold_200569 (97629-97837) | |
| 53-377, gnl|panTro1|chr17 (38896492-38896696) | |
| 53-377, gnl|panTro1|chr21_random (14664709-14664927) | |
| 53-377, gnl|rheMac2|chr10 (38352487-38352693) | |
| 53-377, gnl|rheMac2|chr18 (39781116-39781323) | |
| 53-377, gnl|rn3|chrUn (25815385-25815591) | |
| 53-377, gnl|rn3|chrX (94430945-94431158) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-426, gnl|bosTau2|chr1 (88736786-88737184) | |
| 3-426, gnl|Mm7|chr19 (53167217-53167587) | |
| 53-377, gnl|bosTau2|chr11 (39795984-39796304) | |
| 53-377, gnl|canFam2|chr24 (26413653-26413860) | |
| 53-377, gnl|canFam2|chr4 (27377680-27377894) | |
| 53-377, gnl|dasNov1|scaffold_12360 (14891-14685) | |
| 53-377, gnl|dasNov1|scaffold_2082 (93140-92942) | |
| 53-377, gnl|echTel1|scaffold_264937 (13278-13484) | |
| 53-377, gnl|echTel1|scaffold_298006 (49470-49270) | |
| 53-377, gnl|hg17|chr18 (42556981-42557185) | |
| 53-377, gnl|hg17|chr20 (4942117-4942335) | |
| 53-377, gnl|Hg17|chr4 (15934452-15934134) | |
| 53-377, gnl|loxAfr1|scaffold_87892 (8675-8879) | |
| 53-377, gnl|loxAfr1|scaffold_87892 (8880-8667) | |
| 53-377, gnl|mm7|chr16 (88509825-88509612) | |
| 53-377, gnl|Mm7|chr16 (88509570-88509905) | |
| 53-377, gnl|mm7|chr16_random (3765140-3764931) | |
| 53-377, gnl|monDom2|scaffold_23 (21406129-21405922) | |
| 53-377, gnl|monDom2|scaffold_23 (21405924-21406129) | |
| 53-377, gnl|oryCun1|scaffold_197049 (20013-19806) | |
| 53-377, gnl|oryCun1|scaffold_200569 (97629-97837) | |
| 53-377, gnl|panTro1|chr17 (38896492-38896696) | |
| 53-377, gnl|panTro1|chr21_random (14664709-14664927) | |
| 53-377, gnl|rheMac2|chr10 (38352487-38352693) | |
| 53-377, gnl|rheMac2|chr18 (39781116-39781323) | |
| 53-377, gnl|rn3|chrUn (25815385-25815591) | |
| 53-377, gnl|rn3|chrX (94430945-94431158) |
| Expressed library(ies): 58 entry(ies) | More info |
| Expressed library(ies): 58 entry(ies) | Help | Less info |
| cag (3.32628) | |
| fli (3.04321) | |
| ece (2.98097) | |
| ton (2.457) | |
| lnt (2.41924) | |
| eje (2.37201) | |
| cga (1.95367) | |
| nca (1.91623) | |
| cli (1.83374) | |
| cly (1.80963) | |
| pty (1.71257) | |
| nms (1.49701) | |
| csp (1.45068) | |
| fty (1.40672) | |
| med (1.39502) | |
| cov (1.32153) | |
| nep (1.28747) | |
| jej (1.28598) | |
| eli (1.21451) | |
| hyp (1.14269) | |
| fce (1.08637) | |
| ebs (1.06471) | |
| jca (1.02564) | |
| eye (1.02302) | |
| ese (1.01202) | |
| eep (0.980512) | |
| col (0.975039) | |
| nlu (0.958405) | |
| fbs (0.876732) | |
| mcp (0.853242) | |
| fhi (0.847889) | |
| eru (0.840336) | |
| nje (0.8296) | |
| nco (0.808669) | |
| nmm (0.796813) | |
| elu (0.770713) | |
| ecc (0.690211) | |
| nbm (0.595948) | |
| fcc (0.593354) | |
| cmu (0.55918) | |
| cbe (0.478469) | |
| mas (0.42061) | |
| hlv (0.417769) | |
| amn (0.417711) | |
| ute (0.398353) | |
| gul (0.355177) | |
| ill (0.351185) | |
| cst (0.280073) | |
| lyg (0.266205) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| aor (0.195274) | |
| sto (0.179824) | |
| rec (0.17307) | |
| bfe (0.149858) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) |
| Expressed library(ies): 58 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (3.32628) | |
| fli (3.04321) | |
| ece (2.98097) | |
| ton (2.457) | |
| lnt (2.41924) | |
| eje (2.37201) | |
| cga (1.95367) | |
| nca (1.91623) | |
| cli (1.83374) | |
| cly (1.80963) | |
| pty (1.71257) | |
| nms (1.49701) | |
| csp (1.45068) | |
| fty (1.40672) | |
| med (1.39502) | |
| cov (1.32153) | |
| nep (1.28747) | |
| jej (1.28598) | |
| eli (1.21451) | |
| hyp (1.14269) | |
| fce (1.08637) | |
| ebs (1.06471) | |
| jca (1.02564) | |
| eye (1.02302) | |
| ese (1.01202) | |
| eep (0.980512) | |
| col (0.975039) | |
| nlu (0.958405) | |
| fbs (0.876732) | |
| mcp (0.853242) | |
| fhi (0.847889) | |
| eru (0.840336) | |
| nje (0.8296) | |
| nco (0.808669) | |
| nmm (0.796813) | |
| elu (0.770713) | |
| ecc (0.690211) | |
| nbm (0.595948) | |
| fcc (0.593354) | |
| cmu (0.55918) | |
| cbe (0.478469) | |
| mas (0.42061) | |
| hlv (0.417769) | |
| amn (0.417711) | |
| ute (0.398353) | |
| gul (0.355177) | |
| ill (0.351185) | |
| cst (0.280073) | |
| lyg (0.266205) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| aor (0.195274) | |
| sto (0.179824) | |
| rec (0.17307) | |
| bfe (0.149858) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) |