Non-Coding RNA Search

Ss1.1-reje20b_a2.5

Sequence:


               
               TTAAAGCGCTGTGTGTGCGTGTGTGTGTGTGTGCGTGTGTGCGTGAATGCGTGTGCGTGC
ACGTGTGAGCGCCTGGGTTCCACCACCATCACTGGACCCTTCTGCATCCAAGACTGTGTC
ACAGGACCGGTCACTTCTCTTACTACGCCTCCCTTCCTATCTGTGAAATGGGCCCCCTGA
CAGCACTTCCCACAGGTGGTGAATAGAAGGATTCACCGAACCAGCTCCGGTTAAGCCTCC
TGTCCAGGCAACTGTGACTTCTGTGCGCTCTGTAAAAATTTGCCACATGCTTTGTTCACT
TGTTCTCTAAAGCCAATTTGACTGAGGTTCTTTGAACCGAAATGCTCAAAGGAGGAGAAG
AGCGGGAAGCTGGCAGCGGTGCCCTCTCAACCGAATGTCCCACCATGTCAACAACCACGG
AGCAGAAAACCCGCTCCTGGGCCCTGCCGCCGTCTCGGGCCCTCGGTGTGGCCTGACCTC
CACGTGCCTCTTCAGGCCTGGTCTCGGGACGGTGTGGAGAAGCAGCAGATCCCGCATGCT
GCAGCCTTCTCGCCTTGGCCAACCAGTGCCTCTCCCAAGCTGATGCCTTTTTCAAAGCCG
CAATAAGCCTCATTCCAGAAGTTCCAAAGACGATTAACATCGACGGGAAGATGCGGCCCT
CGGAGTCATTCCTTCTGGAATTCCTCTGCAACTTCTTTTCTACGTTATTAATAGTTCCGG
ATCATCCTGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAGCGCTGTGTGTGCGTGTGTGTGTGTGTGCGTGTGTGCGTGAATGCGTGTGCGTGC
ACGTGTGAGCGCCTGGGTTCCACCACCATCACTGGACCCTTCTGCATCCAAGACTGTGTC
ACAGGACCGGTCACTTCTCTTACTACGCCTCCCTTCCTATCTGTGAAATGGGCCCCCTGA
CAGCACTTCCCACAGGTGGTGAATAGAAGGATTCACCGAACCAGCTCCGGTTAAGCCTCC
TGTCCAGGCAACTGTGACTTCTGTGCGCTCTGTAAAAATTTGCCACATGCTTTGTTCACT
TGTTCTCTAAAGCCAATTTGACTGAGGTTCTTTGAACCGAAATGCTCAAAGGAGGAGAAG
AGCGGGAAGCTGGCAGCGGTGCCCTCTCAACCGAATGTCCCACCATGTCAACAACCACGG
AGCAGAAAACCCGCTCCTGGGCCCTGCCGCCGTCTCGGGCCCTCGGTGTGGCCTGACCTC
CACGTGCCTCTTCAGGCCTGGTCTCGGGACGGTGTGGAGAAGCAGCAGATCCCGCATGCT
GCAGCCTTCTCGCCTTGGCCAACCAGTGCCTCTCCCAAGCTGATGCCTTTTTCAAAGCCG
CAATAAGCCTCATTCCAGAAGTTCCAAAGACGATTAACATCGACGGGAAGATGCGGCCCT
CGGAGTCATTCCTTCTGGAATTCCTCTGCAACTTCTTTTCTACGTTATTAATAGTTCCGG
ATCATCCTGAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               268-414, - strand, RNAz p=0.999525

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-414, - strand, RNAz p=0.999525

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               72-720, gnl|bosTau2|chr25 (16953497-16954142)
               

               
               72-720, gnl|Hg17|chr16 (19587524-19588123)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-720, gnl|bosTau2|chr25 (16953497-16954142)
               

               
               72-720, gnl|Hg17|chr16 (19587524-19588123)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	72-720, gnl\|bosTau2\|chr25 (16953497-16954142)
	72-720, gnl\|Hg17\|chr16 (19587524-19588123)