Non-Coding RNA Search

Ss1.1-reje20b_b3.5

Sequence:


               
               GCTGTTTTCAGTTGAGGCTGCCGCCGCTCTGCACCACTACCAGCCATGGGGACTTCTGGA
GCTGTGCGAGGAAGTATTCGGAACCACCGACCTATACCGAGTGTTGGGCGTGCGACGCGA
GGCCTCAGACGGCGAGGTCCGACGTGGTTACCACAAAGTGTCCCTGCAGGTGCACCCGGA
CCGGGTGGGCGAGGGCGACAAGCAGGACGCCACTCGCCGCTTCCAGATCCTCGGGAAGGT
CTATTCCGTTCTGAGTGACAAAGATCAGAGGGCAGTGTACGATGAGCAGGGAACTGTGGA
CGAGGATTCTGATGTGCTCAGCCAAGATCGGGACTGGGAGACCTATTGGAGATTACTCTT
TAAAAAGATATCTCTAGAGGACATTCAAGCTTTTGAAAAGACATACAAAGGTTCTGAAGA
AGAGCTGGCTGACGTTAAACAGGCCTATCTAGACTTCAAGGGTGACATGGATCAGATTAT
GGAGTCTGTGCTGTGTGTGCAATACACAGAAGAACCCAGAATAAGGAATATTATACAACA
AGCTATTGATGCTGGAGAGGTCCCATCCTATAATGCCTTTGTCAAAGAATCGAAGCAAAA
AATGAATGCAAGGAAAAGAAGGGCTCAGGAGGAGGCTAAAGAAGCAGAAATGAGTAGGAA
GGAGTTGGGGCTTGATGAAGGAGTGGATAGCTTGAAAGCAGTCATTCAGAGCAGACAAAA
GGATCGGCAAAAGGAAATGGACAATTTTCTGGCTCAGATGGAAGCAAAGTACTGCAAACC
TTCCAAACGAGGACAGAAAAAAACGACTCTCAAGAAAGAAAAGAAATAATGGAATTTTCT
CTTCAAAGGCCTTAGGTGTTAATTGGTGCCATTGTAGGCAAGGTACAGTCAAGATTTGAA
GACAAGTGTCAACCAAACCCTTGAGAGAAGTTGTCTTTCAGGCCTGAATTATTCAGATTG
ACTACATAAACCAAGCGGAATCCTCTCAAACTGATCTCAGAATATCGTAGAAATACCCTG
TAATTCTGGTAGGTCTTTGTATGAAAGAATTTGGTGGTGATCATGAGGGAACAGGAGGGT
GGTGTACTTCCTGACAGTACTTTTCTATGGGTCTTCTGTACAAGGCATTATCCAGAATGC
CTCCCACCTTCAGCACTTATCATTTTACCACATGGGAGTGAGCTGCAGAGTACTGAGTGA
TGTGTATTTATTAGAACAGGTAATCTCTTAGCTGTCAGGCCTTCAGTATGGTTGCTGGAT
ATCTGTCTTCCAAGTCCTTGCCAGTTTGCTTTAGCCTTATCTCGCATAGACTCTCTGTTT
TTCTCAACCAAGTTTTATACTCGGCTTGACATATCTGGGAGAAACGGGTTATTCACATTA
CTTCAAGCATCTTTGTAAGACTTATAAATGATTAAATAAACAAGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTTTTCAGTTGAGGCTGCCGCCGCTCTGCACCACTACCAGCCATGGGGACTTCTGGA
GCTGTGCGAGGAAGTATTCGGAACCACCGACCTATACCGAGTGTTGGGCGTGCGACGCGA
GGCCTCAGACGGCGAGGTCCGACGTGGTTACCACAAAGTGTCCCTGCAGGTGCACCCGGA
CCGGGTGGGCGAGGGCGACAAGCAGGACGCCACTCGCCGCTTCCAGATCCTCGGGAAGGT
CTATTCCGTTCTGAGTGACAAAGATCAGAGGGCAGTGTACGATGAGCAGGGAACTGTGGA
CGAGGATTCTGATGTGCTCAGCCAAGATCGGGACTGGGAGACCTATTGGAGATTACTCTT
TAAAAAGATATCTCTAGAGGACATTCAAGCTTTTGAAAAGACATACAAAGGTTCTGAAGA
AGAGCTGGCTGACGTTAAACAGGCCTATCTAGACTTCAAGGGTGACATGGATCAGATTAT
GGAGTCTGTGCTGTGTGTGCAATACACAGAAGAACCCAGAATAAGGAATATTATACAACA
AGCTATTGATGCTGGAGAGGTCCCATCCTATAATGCCTTTGTCAAAGAATCGAAGCAAAA
AATGAATGCAAGGAAAAGAAGGGCTCAGGAGGAGGCTAAAGAAGCAGAAATGAGTAGGAA
GGAGTTGGGGCTTGATGAAGGAGTGGATAGCTTGAAAGCAGTCATTCAGAGCAGACAAAA
GGATCGGCAAAAGGAAATGGACAATTTTCTGGCTCAGATGGAAGCAAAGTACTGCAAACC
TTCCAAACGAGGACAGAAAAAAACGACTCTCAAGAAAGAAAAGAAATAATGGAATTTTCT
CTTCAAAGGCCTTAGGTGTTAATTGGTGCCATTGTAGGCAAGGTACAGTCAAGATTTGAA
GACAAGTGTCAACCAAACCCTTGAGAGAAGTTGTCTTTCAGGCCTGAATTATTCAGATTG
ACTACATAAACCAAGCGGAATCCTCTCAAACTGATCTCAGAATATCGTAGAAATACCCTG
TAATTCTGGTAGGTCTTTGTATGAAAGAATTTGGTGGTGATCATGAGGGAACAGGAGGGT
GGTGTACTTCCTGACAGTACTTTTCTATGGGTCTTCTGTACAAGGCATTATCCAGAATGC
CTCCCACCTTCAGCACTTATCATTTTACCACATGGGAGTGAGCTGCAGAGTACTGAGTGA
TGTGTATTTATTAGAACAGGTAATCTCTTAGCTGTCAGGCCTTCAGTATGGTTGCTGGAT
ATCTGTCTTCCAAGTCCTTGCCAGTTTGCTTTAGCCTTATCTCGCATAGACTCTCTGTTT
TTCTCAACCAAGTTTTATACTCGGCTTGACATATCTGGGAGAAACGGGTTATTCACATTA
CTTCAAGCATCTTTGTAAGACTTATAAATGATTAAATAAACAAGTAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|18677018|dbj|BAB85076.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18677018|dbj|BAB85076.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               3-226, gnl|bosTau2|chr28 (22517569-22517347)
               

               
               3-226, gnl|Hg17|chr10 (74676984-74676774)
               

               
               3-226, gnl|Mm7|chr14 (18045377-18045161)
               


               
               377-669, gnl|bosTau2|chr22 (5772502-5772220)
               

               
               377-669, gnl|Hg17|chr20 (10542536-10542243)
               

               
               377-669, gnl|Mm7|chr14 (18044759-18042397)
               


               
               707-1428, gnl|bosTau2|chr28 (22513580-22512845)
               

               
               707-1428, gnl|Hg17|chr10 (74673286-74672601)
               

               
               707-1428, gnl|Mm7|chr14 (18042038-18041420)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-226, gnl|bosTau2|chr28 (22517569-22517347)
               

               
               3-226, gnl|Hg17|chr10 (74676984-74676774)
               

               
               3-226, gnl|Mm7|chr14 (18045377-18045161)
               


               
               377-669, gnl|bosTau2|chr22 (5772502-5772220)
               

               
               377-669, gnl|Hg17|chr20 (10542536-10542243)
               

               
               377-669, gnl|Mm7|chr14 (18044759-18042397)
               


               
               707-1428, gnl|bosTau2|chr28 (22513580-22512845)
               

               
               707-1428, gnl|Hg17|chr10 (74673286-74672601)
               

               
               707-1428, gnl|Mm7|chr14 (18042038-18041420)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               lun (0.150489)
               

               
               spl (0.143184)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	3-226, gnl\|bosTau2\|chr28 (22517569-22517347)
	3-226, gnl\|Hg17\|chr10 (74676984-74676774)
	3-226, gnl\|Mm7\|chr14 (18045377-18045161)

	377-669, gnl\|bosTau2\|chr22 (5772502-5772220)
	377-669, gnl\|Hg17\|chr20 (10542536-10542243)
	377-669, gnl\|Mm7\|chr14 (18044759-18042397)

	707-1428, gnl\|bosTau2\|chr28 (22513580-22512845)
	707-1428, gnl\|Hg17\|chr10 (74673286-74672601)
	707-1428, gnl\|Mm7\|chr14 (18042038-18041420)

	lun (0.150489)
	spl (0.143184)
	bla (0.124347)
	pgl (0.118483)
	eje (0.0988338)