Non-Coding RNA Search

Ss1.1-reje20b_f6.5

Sequence:


               
               TTAGTTTTAAGAGCTAAGATATTTCTTTAAAGATAACATCTAAAGCTAAATGTTTCCACC
CATCTACCCACAACATTCGTCTAAGTGTTAAATTGTGCAGCTGCATTCCCGTAGCTATAC
TTAGCAATATCTCCAGACTAACACCTCCTGCCTCCCTCTGGGGTGCTGATCTGAGAGGTA
CGGCCATCCAGGAGTCCATTGTCATCCTCACGTCACCGAGGGGGTGAAATCACTTCAACA
CCAGCGCCATGGGGTTGGAACTTCATGGTAAGGGACTATGTCTTTGGGTTTTGTTTTTTT
GTTTTCGTCAACCCCTCATAAAAAAAATCCTGACTTGGGACTTAATTATAGCAGGATGTT
CATGTTTGTATTAGTTGTTGAAATTGTACAGTTACAGACATTTCTTTCAAATTTTGTAAA
TTTCAATATGCCTTTAACATGGACACACCTGTATAATAAGGAAAGGTGAAAATGACACTA
ATCCAAATGTGTAAATAGGCCTGGCTCCGGCCACAGCTAAAGTTGGTTGTATGTAAATTT
TGCTGTGATTAACTGTATACTTTGTACTGTATTTAGAGGGTTGGAAGTCTTCATGTGTTG
ATGGATAAAACTTTTCGAAAAATCTAGCAACTGAGACAGTGCTGCTTCAGAACATCCCCT
GCCTCCTTAGCTAATTTATTTATGCTGCCATTCTTTATTTAGTATACTTTAAAGGAAGTT
GACATACAAGTTCTATATTAGAACTATCAAACTGCTGCCTATCCATTTTGCCCATTATTA
TTTCTCTATGAAATTATCACTGTTAGGTTTTATAAGGTCCTTTTGAAGATATTTTCACTG
ATCGTCCTAAATTATTTGCTGCTTGCCATTGAATTTTCATTTCAGTGTGGAGCATCTGAA
ATAAAATCTCTTAAGTTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGTTTTAAGAGCTAAGATATTTCTTTAAAGATAACATCTAAAGCTAAATGTTTCCACC
CATCTACCCACAACATTCGTCTAAGTGTTAAATTGTGCAGCTGCATTCCCGTAGCTATAC
TTAGCAATATCTCCAGACTAACACCTCCTGCCTCCCTCTGGGGTGCTGATCTGAGAGGTA
CGGCCATCCAGGAGTCCATTGTCATCCTCACGTCACCGAGGGGGTGAAATCACTTCAACA
CCAGCGCCATGGGGTTGGAACTTCATGGTAAGGGACTATGTCTTTGGGTTTTGTTTTTTT
GTTTTCGTCAACCCCTCATAAAAAAAATCCTGACTTGGGACTTAATTATAGCAGGATGTT
CATGTTTGTATTAGTTGTTGAAATTGTACAGTTACAGACATTTCTTTCAAATTTTGTAAA
TTTCAATATGCCTTTAACATGGACACACCTGTATAATAAGGAAAGGTGAAAATGACACTA
ATCCAAATGTGTAAATAGGCCTGGCTCCGGCCACAGCTAAAGTTGGTTGTATGTAAATTT
TGCTGTGATTAACTGTATACTTTGTACTGTATTTAGAGGGTTGGAAGTCTTCATGTGTTG
ATGGATAAAACTTTTCGAAAAATCTAGCAACTGAGACAGTGCTGCTTCAGAACATCCCCT
GCCTCCTTAGCTAATTTATTTATGCTGCCATTCTTTATTTAGTATACTTTAAAGGAAGTT
GACATACAAGTTCTATATTAGAACTATCAAACTGCTGCCTATCCATTTTGCCCATTATTA
TTTCTCTATGAAATTATCACTGTTAGGTTTTATAAGGTCCTTTTGAAGATATTTTCACTG
ATCGTCCTAAATTATTTGCTGCTTGCCATTGAATTTTCATTTCAGTGTGGAGCATCTGAA
ATAAAATCTCTTAAGTTAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-924, gnl|bosTau2|chr21 (36418934-36418013)
               

               
               1-924, gnl|Hg17|chr14 (91504745-91503838)
               

               
               1-924, gnl|Mm7|chr12 (99332022-99330715)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-924, gnl|bosTau2|chr21 (36418934-36418013)
               

               
               1-924, gnl|Hg17|chr14 (91504745-91503838)
               

               
               1-924, gnl|Mm7|chr12 (99332022-99330715)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               liv (0.292569)
               

               
               fat (0.147427)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               fat (0.147427)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1-924, gnl\|bosTau2\|chr21 (36418934-36418013)
	1-924, gnl\|Hg17\|chr14 (91504745-91503838)
	1-924, gnl\|Mm7\|chr12 (99332022-99330715)

	liv (0.292569)
	fat (0.147427)
	cst (0.140036)
	ste (0.135208)
	kid (0.129735)
	ret (0.128733)
	tra (0.123092)
	ebs (0.118301)
	med (0.116252)
	spc (0.113366)
	eje (0.0988338)