Non-Coding RNA Search

Ss1.1-reje21b_k2.5

Sequence:


               
               GAGGCCACTGCTCTGGGCCCACCGCTCCTCCCCCAGCCGGAGGGGATGGCCAGCCACGAC
CGCGGCCTCATTGCTCGTTCTTCCTTTCCCCTAATCCCTGAGCCTCTGGCCACCTCACCC
GTGACTGTGAAAAGGGATGTGGCACAGCAGGGGTTAACTCATGAAGGCAGCCCCCACTCC
CACCCTGTGCCTTGCTTGGGGACAGAAAGAGAAGGGCCGTCTTCAAGCTTGCCCCCTTCC
CCCCTTCAGCTCCCGTGAAGTGTTCTCTTTCAAGCAACCAAAATGTGATGGCCTGTGACT
CTCCTATTTAATTTAATTCTTGGAAGGTTTAGACCCTGAAAGGTGTCTATGCCTGTTCCA
CCCACCTCCCCCCATACAAAGCCCTTCCCCATCCTCCGGAAGGAGGGGGCCCATTCTGCA
CCTTCCCACTCATCACCCCAGAGAGGGGGCTGGCAGGGACGATGCCACAGCCCCTACACC
GGATCTCACTGCATTCTTCTCGCTCATGGCCTCTGGGGCTGCCCAGGGCCCAGCCGGGGG
CCGCCTGCCCTGAGACAGACCACATGTGCCTTTCCACAGACTTGGACTTCGCCAAGGGCG
AAGGTGCCTGTTTCCCCCTCTAAACAAATATTTTTGTAAGGTTCTGGGACAGAGAGTGAG
CATGAAGTATGAGGAAAACTTGAATTCCAGATTTTTAATGCAAAGTATTTATCATTTGTA
CCAGAAATAAAAGTTTAAATTTTTATTTGACTGACCGCTCTGGACTCAAGAGTTCTGAGC
GAACTTTTGACCAATGCTGCCACCTGGTGTCAGGAGACGTGTCCCTGTATTTGGTTGATG
ACCAATCTTGTGACAACTTCTAAAGCACCTATTATATGCTCAGCCGCTGTGTGATGGCGA
GAGGATGTAGATGGGGGCGGGTATTACCAGCAAAGGATGCGACAAAACTTGTGCATTTAA
GAAGACGTGGCGTTCCCATCGTGGCGCAGTGGTTAACAAATTTGACTAGGAACCATGAGG
TTGTGGGTTCGATCCCTGGCCTTGCTCAATGGATTACAGATCTGGTATTGCTGTGAGCTG
CGGTGTAGGTCGCAGACACGACTCGGATCCCACTTTGCTGTGGCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCCACTGCTCTGGGCCCACCGCTCCTCCCCCAGCCGGAGGGGATGGCCAGCCACGAC
CGCGGCCTCATTGCTCGTTCTTCCTTTCCCCTAATCCCTGAGCCTCTGGCCACCTCACCC
GTGACTGTGAAAAGGGATGTGGCACAGCAGGGGTTAACTCATGAAGGCAGCCCCCACTCC
CACCCTGTGCCTTGCTTGGGGACAGAAAGAGAAGGGCCGTCTTCAAGCTTGCCCCCTTCC
CCCCTTCAGCTCCCGTGAAGTGTTCTCTTTCAAGCAACCAAAATGTGATGGCCTGTGACT
CTCCTATTTAATTTAATTCTTGGAAGGTTTAGACCCTGAAAGGTGTCTATGCCTGTTCCA
CCCACCTCCCCCCATACAAAGCCCTTCCCCATCCTCCGGAAGGAGGGGGCCCATTCTGCA
CCTTCCCACTCATCACCCCAGAGAGGGGGCTGGCAGGGACGATGCCACAGCCCCTACACC
GGATCTCACTGCATTCTTCTCGCTCATGGCCTCTGGGGCTGCCCAGGGCCCAGCCGGGGG
CCGCCTGCCCTGAGACAGACCACATGTGCCTTTCCACAGACTTGGACTTCGCCAAGGGCG
AAGGTGCCTGTTTCCCCCTCTAAACAAATATTTTTGTAAGGTTCTGGGACAGAGAGTGAG
CATGAAGTATGAGGAAAACTTGAATTCCAGATTTTTAATGCAAAGTATTTATCATTTGTA
CCAGAAATAAAAGTTTAAATTTTTATTTGACTGACCGCTCTGGACTCAAGAGTTCTGAGC
GAACTTTTGACCAATGCTGCCACCTGGTGTCAGGAGACGTGTCCCTGTATTTGGTTGATG
ACCAATCTTGTGACAACTTCTAAAGCACCTATTATATGCTCAGCCGCTGTGTGATGGCGA
GAGGATGTAGATGGGGGCGGGTATTACCAGCAAAGGATGCGACAAAACTTGTGCATTTAA
GAAGACGTGGCGTTCCCATCGTGGCGCAGTGGTTAACAAATTTGACTAGGAACCATGAGG
TTGTGGGTTCGATCCCTGGCCTTGCTCAATGGATTACAGATCTGGTATTGCTGTGAGCTG
CGGTGTAGGTCGCAGACACGACTCGGATCCCACTTTGCTGTGGCTGTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               298-412, - strand, RNAz p=0.997726
               

               
               742-887, - strand, RNAz p=0.998267

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               298-412, - strand, RNAz p=0.997726
               

               
               742-887, - strand, RNAz p=0.998267

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-965, gnl|bosTau2|chr15 (15709396-15708438)
               

               
               1-965, gnl|Hg17|chr11 (119605078-119606066)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-965, gnl|bosTau2|chr15 (15709396-15708438)
               

               
               1-965, gnl|Hg17|chr11 (119605078-119606066)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cli (0.611247)
               

               
               eru (0.240096)
               

               
               cbl (0.229595)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.611247)
               

               
               eru (0.240096)
               

               
               cbl (0.229595)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	298-412, - strand, RNAz p=0.997726
	742-887, - strand, RNAz p=0.998267

	1-965, gnl\|bosTau2\|chr15 (15709396-15708438)
	1-965, gnl\|Hg17\|chr11 (119605078-119606066)

	cli (0.611247)
	eru (0.240096)
	cbl (0.229595)
	col (0.195008)
	fty (0.17584)
	ill (0.175593)
	csp (0.161186)
	cag (0.151194)
	ute (0.132784)
	cov (0.132153)
	ova (0.129132)
	cbr (0.127975)
	ese (0.126502)
	jca (0.11396)
	eje (0.0988338)