Ss1.1-reje22b_j22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCAGCTGAGATTCAGGACTAGAGTGGTAGAGCTGGAAGGGACCTTAGTGACCATCTGGT CCAGCCCCCGTAATTTACAGCCCTGGATCAAGTAACTTGCATGCAGTCACACAGCATTTT GGTGGAAAGTCGAGTGTTGCGCTCATAACTTTGGACTCCTGTCTAGGACTCCAGGCATTG TCCTTATACCTCCCTAACTGAAGCAATGTGTGGCATTTCCTCTCCACATAGCAAGATTTT CTTTAAGCTCTAGATAGGTGTTACTTGGGGTGCTAACCTGGGGGCGGGCTCCAAACCTCA CAGGATGCATGCAGTGTCCTAGGTGCAAAGGCAGTGTCCTAGGCACAGCTGACTTTAACT AAATGAGGATCCTTCCTCTGCTTAGAGGAAGATGCTTATTTAGAGCTGTGTGGCCTTTGT CTTATGAGCCCTGGGTGGAGTATGTCACTGCAGATGCCAGGGGTGGTGACCATGCTCTTC CTTTGCCCCTTTGCAGGAATTTGAGGACCTCTGGCCTCACTTGTCTTTGGTCATTGATGG GGGACCAATTGGGGATGGCCAGAGCCCTGAGTGCCGATTAGGGTCAACGGTTGTTGACTT GTCTGTGCCTGGAAAGTTTGGCATCATTCGTCCGGGTTGGTGAGTCTCTTTGCTATGGCA CGGGGATAGGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCAGCTGAGATTCAGGACTAGAGTGGTAGAGCTGGAAGGGACCTTAGTGACCATCTGGT CCAGCCCCCGTAATTTACAGCCCTGGATCAAGTAACTTGCATGCAGTCACACAGCATTTT GGTGGAAAGTCGAGTGTTGCGCTCATAACTTTGGACTCCTGTCTAGGACTCCAGGCATTG TCCTTATACCTCCCTAACTGAAGCAATGTGTGGCATTTCCTCTCCACATAGCAAGATTTT CTTTAAGCTCTAGATAGGTGTTACTTGGGGTGCTAACCTGGGGGCGGGCTCCAAACCTCA CAGGATGCATGCAGTGTCCTAGGTGCAAAGGCAGTGTCCTAGGCACAGCTGACTTTAACT AAATGAGGATCCTTCCTCTGCTTAGAGGAAGATGCTTATTTAGAGCTGTGTGGCCTTTGT CTTATGAGCCCTGGGTGGAGTATGTCACTGCAGATGCCAGGGGTGGTGACCATGCTCTTC CTTTGCCCCTTTGCAGGAATTTGAGGACCTCTGGCCTCACTTGTCTTTGGTCATTGATGG GGGACCAATTGGGGATGGCCAGAGCCCTGAGTGCCGATTAGGGTCAACGGTTGTTGACTT GTCTGTGCCTGGAAAGTTTGGCATCATTCGTCCGGGTTGGTGAGTCTCTTTGCTATGGCA CGGGGATAGGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 292-447, - strand, RNAz p=0.965766 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 292-447, - strand, RNAz p=0.965766 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-458, gnl|bosTau2|chr3 (75293332-75293771) | |
| 1-458, gnl|Hg17|chr1 (37940142-37939225) | |
| 466-651, gnl|bosTau2|chr3 (75293755-75293941) | |
| 466-651, gnl|canFam2|chr15 (7731709-7731484) | |
| 466-651, gnl|canFam2|chr15 (7731516-7731647) | |
| 466-651, gnl|canFam2|chr15 (7731659-7731519) | |
| 466-651, gnl|danRer3|chr20 (53369345-53369533) | |
| 466-651, gnl|dasNov1|scaffold_100327 (5109-4990) | |
| 466-651, gnl|dasNov1|scaffold_100327 (4979-5108) | |
| 466-651, gnl|dasNov1|scaffold_39241 (388-160) | |
| 466-651, gnl|echTel1|scaffold_299323 (6440-6305) | |
| 466-651, gnl|echTel1|scaffold_319920 (4535-4339) | |
| 466-651, gnl|echTel1|scaffold_319920 (4509-4368) | |
| 466-651, gnl|fr1|chrUn (293967895-293968066) | |
| 466-651, gnl|fr1|chrUn (293967902-293968032) | |
| 466-651, gnl|galGal2|chr23 (3125247-3125043) | |
| 466-651, gnl|hg17|chr1 (37939016-37939245) | |
| 466-651, gnl|Hg17|chr1 (37939268-37939058) | |
| 466-651, gnl|hg17|chr21 (41158062-41158198) | |
| 466-651, gnl|hg17|chr9 (94274543-94274685) | |
| 466-651, gnl|loxAfr1|scaffold_7945 (46642-46844) | |
| 466-651, gnl|loxAfr1|scaffold_7945 (46815-46679) | |
| 466-651, gnl|loxAfr1|scaffold_7945 (46672-46812) | |
| 466-651, gnl|mm7|chr4 (124298713-124298495) | |
| 466-651, gnl|mm7|chr4 (124298520-124298651) | |
| 466-651, gnl|mm7|chr4 (124298663-124298521) | |
| 466-651, gnl|Mm7|chr4 (124298482-124298675) | |
| 466-651, gnl|monDom2|scaffold_377 (54615-54750) | |
| 466-651, gnl|monDom2|scaffold_43 (11696375-11696177) | |
| 466-651, gnl|oryCun1|scaffold_214111 (73060-72836) | |
| 466-651, gnl|oryCun1|scaffold_214111 (72866-72997) | |
| 466-651, gnl|oryCun1|scaffold_214111 (73009-72867) | |
| 466-651, gnl|panTro1|chr1 (38781077-38781306) | |
| 466-651, gnl|panTro1|chr22 (41206364-41206496) | |
| 466-651, gnl|panTro1|chrUn_random (29805915-29806058) | |
| 466-651, gnl|rheMac2|chr1 (40673162-40673391) | |
| 466-651, gnl|rheMac2|chr15 (106156465-106156607) | |
| 466-651, gnl|rheMac2|chr3 (5785743-5785611) | |
| 466-651, gnl|rn3|chr5 (144197159-144196944) | |
| 466-651, gnl|rn3|chr5 (144196966-144197097) | |
| 466-651, gnl|rn3|chr5 (144197109-144196967) | |
| 466-651, gnl|tetNig1|chrUn_random (115292511-115292367) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-458, gnl|bosTau2|chr3 (75293332-75293771) | |
| 1-458, gnl|Hg17|chr1 (37940142-37939225) | |
| 466-651, gnl|bosTau2|chr3 (75293755-75293941) | |
| 466-651, gnl|canFam2|chr15 (7731709-7731484) | |
| 466-651, gnl|canFam2|chr15 (7731516-7731647) | |
| 466-651, gnl|canFam2|chr15 (7731659-7731519) | |
| 466-651, gnl|danRer3|chr20 (53369345-53369533) | |
| 466-651, gnl|dasNov1|scaffold_100327 (5109-4990) | |
| 466-651, gnl|dasNov1|scaffold_100327 (4979-5108) | |
| 466-651, gnl|dasNov1|scaffold_39241 (388-160) | |
| 466-651, gnl|echTel1|scaffold_299323 (6440-6305) | |
| 466-651, gnl|echTel1|scaffold_319920 (4535-4339) | |
| 466-651, gnl|echTel1|scaffold_319920 (4509-4368) | |
| 466-651, gnl|fr1|chrUn (293967895-293968066) | |
| 466-651, gnl|fr1|chrUn (293967902-293968032) | |
| 466-651, gnl|galGal2|chr23 (3125247-3125043) | |
| 466-651, gnl|hg17|chr1 (37939016-37939245) | |
| 466-651, gnl|Hg17|chr1 (37939268-37939058) | |
| 466-651, gnl|hg17|chr21 (41158062-41158198) | |
| 466-651, gnl|hg17|chr9 (94274543-94274685) | |
| 466-651, gnl|loxAfr1|scaffold_7945 (46642-46844) | |
| 466-651, gnl|loxAfr1|scaffold_7945 (46815-46679) | |
| 466-651, gnl|loxAfr1|scaffold_7945 (46672-46812) | |
| 466-651, gnl|mm7|chr4 (124298713-124298495) | |
| 466-651, gnl|mm7|chr4 (124298520-124298651) | |
| 466-651, gnl|mm7|chr4 (124298663-124298521) | |
| 466-651, gnl|Mm7|chr4 (124298482-124298675) | |
| 466-651, gnl|monDom2|scaffold_377 (54615-54750) | |
| 466-651, gnl|monDom2|scaffold_43 (11696375-11696177) | |
| 466-651, gnl|oryCun1|scaffold_214111 (73060-72836) | |
| 466-651, gnl|oryCun1|scaffold_214111 (72866-72997) | |
| 466-651, gnl|oryCun1|scaffold_214111 (73009-72867) | |
| 466-651, gnl|panTro1|chr1 (38781077-38781306) | |
| 466-651, gnl|panTro1|chr22 (41206364-41206496) | |
| 466-651, gnl|panTro1|chrUn_random (29805915-29806058) | |
| 466-651, gnl|rheMac2|chr1 (40673162-40673391) | |
| 466-651, gnl|rheMac2|chr15 (106156465-106156607) | |
| 466-651, gnl|rheMac2|chr3 (5785743-5785611) | |
| 466-651, gnl|rn3|chr5 (144197159-144196944) | |
| 466-651, gnl|rn3|chr5 (144196966-144197097) | |
| 466-651, gnl|rn3|chr5 (144197109-144196967) | |
| 466-651, gnl|tetNig1|chrUn_random (115292511-115292367) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| eje (0.0988338) |