Ss1.1-reje23b_h11.5
|
AAAGCGGCGGTACGGTCGGAATCCTCAGCACTGTGGCCTACTGGGTAGTATTGCTCCTTA
TTGCAGGTAACAGTGAGTCAAAGCAAACATCACCTGTCTTGTGTACAGCCACGACGGCAC
AGGTACGTGAGCAGGGCCCAGCTCCTAGGCTGGCATGCCCCCTCTGTCTAGGGAGCTGCT
GAGCCAGTGAGGCATGTGCCCTCCAGTGCTCACCACTGTGCTTTAGCTCCAGATGGAGCA
GCTGGGGAGTAGTTGCTGATGGTGAGCACACAGTGGGAGGATGCAGCAGATGACCCACAG
AGATGCCAGGCACTTGGAGAATGCTGCCGATGATATTTGGCAAGATCTGTCCTAAAGCCC
AGGCTACTTGCCTGTGCAGGTTCTTATGCCTTTGACTCATCCCGAATTAATGGGTATAAT
CTTTCTGAGCATTCTGCTACCCCTGAGTTGGCAGCGTGTTCCTTGTCTACCCTAGACGCC
TGAATTGCCTGCTGTTCCAGCAGAGTAAGATGGGTGCTATACCTGGGTATNAGGAGGGGG
CACTACTGGCAAGAAGCCCACCCCAACCCCCAACTGCTGGTCTAGCTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAAGCGGCGGTACGGTCGGAATCCTCAGCACTGTGGCCTACTGGGTAGTATTGCTCCTTA
TTGCAGGTAACAGTGAGTCAAAGCAAACATCACCTGTCTTGTGTACAGCCACGACGGCAC
AGGTACGTGAGCAGGGCCCAGCTCCTAGGCTGGCATGCCCCCTCTGTCTAGGGAGCTGCT
GAGCCAGTGAGGCATGTGCCCTCCAGTGCTCACCACTGTGCTTTAGCTCCAGATGGAGCA
GCTGGGGAGTAGTTGCTGATGGTGAGCACACAGTGGGAGGATGCAGCAGATGACCCACAG
AGATGCCAGGCACTTGGAGAATGCTGCCGATGATATTTGGCAAGATCTGTCCTAAAGCCC
AGGCTACTTGCCTGTGCAGGTTCTTATGCCTTTGACTCATCCCGAATTAATGGGTATAAT
CTTTCTGAGCATTCTGCTACCCCTGAGTTGGCAGCGTGTTCCTTGTCTACCCTAGACGCC
TGAATTGCCTGCTGTTCCAGCAGAGTAAGATGGGTGCTATACCTGGGTATNAGGAGGGGG
CACTACTGGCAAGAAGCCCACCCCAACCCCCAACTGCTGGTCTAGCTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
127-285, + strand, RNAmicro p=0.997103 |
|
126-195, - strand, RNAmicro p=0.980006 |
|
239-339, - strand, RNAmicro p=0.939504 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
127-285, + strand, RNAmicro p=0.997103 |
|
126-195, - strand, RNAmicro p=0.980006 |
|
239-339, - strand, RNAmicro p=0.939504 |
|
83-282, BP165146 full-length enriched swine cDNA library, adult thymus Sus
(dbj|BP165146.1|), blast E-value=0, identity=100% |
|
83-282, DA107453 BRACE3 Homo sapiens cDNA clone BRACE3022212 5', mRNA
(dbj|DA107453.1|), blast E-value=0, identity=95.52% |
|
83-268, vx17h07.y1 Soares_thymus_2NbMT Mus musculus cDNA clone (gb|AI509652.1|),
blast E-value=0, identity=90.86% |
|
83-268, UI-M-AM1-afu-c-07-0-UI.r1 NIH_BMAP_MAM_N Mus musculus cDNA clone
(gb|BE653490.1|), blast E-value=0, identity=90.86% |
|
83-282, CH3#070_B10MF Canine heart normalized cDNA Library in pBluescript
(gb|CF410915.1|), blast E-value=0, identity=94% |
|
83-282, LB029107.CR_E17 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE368386.1|),
blast E-value=0, identity=95.5% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
83-282, BP165146 full-length enriched swine cDNA library, adult thymus Sus
(dbj|BP165146.1|), blast E-value=0, identity=100% |
|
83-282, DA107453 BRACE3 Homo sapiens cDNA clone BRACE3022212 5', mRNA
(dbj|DA107453.1|), blast E-value=0, identity=95.52% |
|
83-268, vx17h07.y1 Soares_thymus_2NbMT Mus musculus cDNA clone (gb|AI509652.1|),
blast E-value=0, identity=90.86% |
|
83-268, UI-M-AM1-afu-c-07-0-UI.r1 NIH_BMAP_MAM_N Mus musculus cDNA clone
(gb|BE653490.1|), blast E-value=0, identity=90.86% |
|
83-282, CH3#070_B10MF Canine heart normalized cDNA Library in pBluescript
(gb|CF410915.1|), blast E-value=0, identity=94% |
|
83-282, LB029107.CR_E17 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE368386.1|),
blast E-value=0, identity=95.5% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map