Non-Coding RNA Search

Ss1.1-reje26b_m12.5.5

Sequence:


               
               GGGTTTCCCAATCCGCCGCCATCCGCGGCCTGGGGGTCGACTTGGGGGTTGGTGTCGACA
CTTTCTGTCCCTTGGGGTCTGGCGGCTTCGTTCCGGATCCTGTCCTGCGAGCACGACCCG
CAAGCGGCCTGAGCTGAGGCGACAGTGAGCGCAGCCTGAAGTTCGGGCCCACCGCTTGAA
CTTGCGGATTCCTGAGCGACTCCTCGAGTGGTCGCTGCTGAAATGGGCAAGTTCATGAAA
CCCGGGAAGGTGGTGCTGGTCCTGGCTGGTCGCTACTCCGGACGCAAAGCGGTCATCGTA
AAGAACATTGATGATGGCACCTCAGACCGACCCTACAGCCATGCTCTGGTGGCTGGAATT
GATCGCTATCCCCGCAAAGTGACAGCTGCCATGGGCAAGAAGAAAATTGCCAAGAGATCA
AAGATTAAGTCTTTTGTGAAAGTTTATAATTATAATCACCTCATGCCCACAAGGTACTCC
GTGGATATCCCCTTGGACAAAACTGTTGTCAATAAGGATGTCTTCAGAGACCCTGCACTC
AAACGCAAGGCCCGACGAGAGGCCAAGGTCAAGTTCGAGGAGAGATACAAGACCGGCAAG
AACAAATGGTTCTTCCAGAAGCTGCGGTTTTAGGTCTGTCTTATTTCGGTCATTAAAATT
AAAAAAAAGAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTTCCCAATCCGCCGCCATCCGCGGCCTGGGGGTCGACTTGGGGGTTGGTGTCGACA
CTTTCTGTCCCTTGGGGTCTGGCGGCTTCGTTCCGGATCCTGTCCTGCGAGCACGACCCG
CAAGCGGCCTGAGCTGAGGCGACAGTGAGCGCAGCCTGAAGTTCGGGCCCACCGCTTGAA
CTTGCGGATTCCTGAGCGACTCCTCGAGTGGTCGCTGCTGAAATGGGCAAGTTCATGAAA
CCCGGGAAGGTGGTGCTGGTCCTGGCTGGTCGCTACTCCGGACGCAAAGCGGTCATCGTA
AAGAACATTGATGATGGCACCTCAGACCGACCCTACAGCCATGCTCTGGTGGCTGGAATT
GATCGCTATCCCCGCAAAGTGACAGCTGCCATGGGCAAGAAGAAAATTGCCAAGAGATCA
AAGATTAAGTCTTTTGTGAAAGTTTATAATTATAATCACCTCATGCCCACAAGGTACTCC
GTGGATATCCCCTTGGACAAAACTGTTGTCAATAAGGATGTCTTCAGAGACCCTGCACTC
AAACGCAAGGCCCGACGAGAGGCCAAGGTCAAGTTCGAGGAGAGATACAAGACCGGCAAG
AACAAATGGTTCTTCCAGAAGCTGCGGTTTTAGGTCTGTCTTATTTCGGTCATTAAAATT
AAAAAAAAGAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5BLJ9_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5BLJ9_MOUSE

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               203-561, - strand, RNAz p=0.874669
               

               
               581-697, - strand, RNAz p=0.985453

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               203-561, - strand, RNAz p=0.874669
               

               
               581-697, - strand, RNAz p=0.985453

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               203-712, gnl|bosTau2|chr26 (6673438-6673948)
               

               
               203-712, gnl|Hg17|chr2 (63823071-63823590)
               

               
               203-712, gnl|Mm7|chr11 (94146687-94146173)
               


               
               375-697, gnl|bosTau2|chr10 (16379909-16379582)
               

               
               375-697, gnl|Hg17|chr2 (63823242-63823545)
               

               
               375-697, gnl|Mm7|chr18 (6536675-6536981)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               203-712, gnl|bosTau2|chr26 (6673438-6673948)
               

               
               203-712, gnl|Hg17|chr2 (63823071-63823590)
               

               
               203-712, gnl|Mm7|chr11 (94146687-94146173)
               


               
               375-697, gnl|bosTau2|chr10 (16379909-16379582)
               

               
               375-697, gnl|Hg17|chr2 (63823242-63823545)
               

               
               375-697, gnl|Mm7|chr18 (6536675-6536981)

Expressed library(ies): 72 entry(ies)

More info

Expressed library(ies): 72 entry(ies)

Help | Less info


               
               elu (2.31214)
               

               
               nep (1.83925)
               

               
               fbs (1.75346)
               

               
               fty (1.58256)
               

               
               col (1.56006)
               

               
               mcp (1.53584)
               

               
               nje (1.49328)
               

               
               mas (1.47213)
               

               
               eye (1.36402)
               

               
               fce (1.35796)
               

               
               nms (1.28315)
               

               
               amn (1.25313)
               

               
               nbm (1.1919)
               

               
               cut (1.18946)
               

               
               aor (1.17165)
               

               
               ece (1.14653)
               

               
               lnt (1.13847)
               

               
               eje (1.08717)
               

               
               eru (1.08043)
               

               
               nco (0.970403)
               

               
               nca (0.958117)
               

               
               sme (0.91631)
               

               
               jca (0.911681)
               

               
               ton (0.877501)
               

               
               eep (0.857948)
               

               
               cga (0.837287)
               

               
               med (0.813764)
               

               
               fli (0.811524)
               

               
               csp (0.805932)
               

               
               ese (0.759013)
               

               
               pty (0.713572)
               

               
               hlv (0.696282)
               

               
               duo (0.691204)
               

               
               ecc (0.690211)
               

               
               nmm (0.664011)
               

               
               cli (0.611247)
               

               
               eli (0.607257)
               

               
               cag (0.604778)
               

               
               ebs (0.591506)
               

               
               nlu (0.575043)
               

               
               sag (0.548145)
               

               
               ute (0.531138)
               

               
               cov (0.528611)
               

               
               ill (0.526778)
               

               
               fhi (0.508733)
               

               
               cly (0.482567)
               

               
               mga (0.480615)
               

               
               cbe (0.478469)
               

               
               spc (0.453463)
               

               
               fat (0.442282)
               

               
               csk (0.422238)
               

               
               cst (0.420109)
               

               
               jej (0.395687)
               

               
               fcc (0.39557)
               

               
               thg (0.380373)
               

               
               che (0.272628)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

Expressed library(ies): 72 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (2.31214)
               

               
               nep (1.83925)
               

               
               fbs (1.75346)
               

               
               fty (1.58256)
               

               
               col (1.56006)
               

               
               mcp (1.53584)
               

               
               nje (1.49328)
               

               
               mas (1.47213)
               

               
               eye (1.36402)
               

               
               fce (1.35796)
               

               
               nms (1.28315)
               

               
               amn (1.25313)
               

               
               nbm (1.1919)
               

               
               cut (1.18946)
               

               
               aor (1.17165)
               

               
               ece (1.14653)
               

               
               lnt (1.13847)
               

               
               eje (1.08717)
               

               
               eru (1.08043)
               

               
               nco (0.970403)
               

               
               nca (0.958117)
               

               
               sme (0.91631)
               

               
               jca (0.911681)
               

               
               ton (0.877501)
               

               
               eep (0.857948)
               

               
               cga (0.837287)
               

               
               med (0.813764)
               

               
               fli (0.811524)
               

               
               csp (0.805932)
               

               
               ese (0.759013)
               

               
               pty (0.713572)
               

               
               hlv (0.696282)
               

               
               duo (0.691204)
               

               
               ecc (0.690211)
               

               
               nmm (0.664011)
               

               
               cli (0.611247)
               

               
               eli (0.607257)
               

               
               cag (0.604778)
               

               
               ebs (0.591506)
               

               
               nlu (0.575043)
               

               
               sag (0.548145)
               

               
               ute (0.531138)
               

               
               cov (0.528611)
               

               
               ill (0.526778)
               

               
               fhi (0.508733)
               

               
               cly (0.482567)
               

               
               mga (0.480615)
               

               
               cbe (0.478469)
               

               
               spc (0.453463)
               

               
               fat (0.442282)
               

               
               csk (0.422238)
               

               
               cst (0.420109)
               

               
               jej (0.395687)
               

               
               fcc (0.39557)
               

               
               thg (0.380373)
               

               
               che (0.272628)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

	203-561, - strand, RNAz p=0.874669
	581-697, - strand, RNAz p=0.985453

	203-712, gnl\|bosTau2\|chr26 (6673438-6673948)
	203-712, gnl\|Hg17\|chr2 (63823071-63823590)
	203-712, gnl\|Mm7\|chr11 (94146687-94146173)

	375-697, gnl\|bosTau2\|chr10 (16379909-16379582)
	375-697, gnl\|Hg17\|chr2 (63823242-63823545)
	375-697, gnl\|Mm7\|chr18 (6536675-6536981)

	elu (2.31214)
	nep (1.83925)
	fbs (1.75346)
	fty (1.58256)
	col (1.56006)
	mcp (1.53584)
	nje (1.49328)
	mas (1.47213)
	eye (1.36402)
	fce (1.35796)
	nms (1.28315)
	amn (1.25313)
	nbm (1.1919)
	cut (1.18946)
	aor (1.17165)
	ece (1.14653)
	lnt (1.13847)
	eje (1.08717)
	eru (1.08043)
	nco (0.970403)
	nca (0.958117)
	sme (0.91631)
	jca (0.911681)
	ton (0.877501)
	eep (0.857948)
	cga (0.837287)
	med (0.813764)
	fli (0.811524)
	csp (0.805932)
	ese (0.759013)
	pty (0.713572)
	hlv (0.696282)
	duo (0.691204)
	ecc (0.690211)
	nmm (0.664011)
	cli (0.611247)
	eli (0.607257)
	cag (0.604778)
	ebs (0.591506)
	nlu (0.575043)
	sag (0.548145)
	ute (0.531138)
	cov (0.528611)
	ill (0.526778)
	fhi (0.508733)
	cly (0.482567)
	mga (0.480615)
	cbe (0.478469)
	spc (0.453463)
	fat (0.442282)
	csk (0.422238)
	cst (0.420109)
	jej (0.395687)
	fcc (0.39557)
	thg (0.380373)
	che (0.272628)
	bla (0.248694)
	mgp (0.230681)
	hea (0.204499)
	sto (0.179824)
	rec (0.17307)
	cje (0.165235)
	cki (0.165235)
	bfe (0.149858)
	lin (0.145603)
	spl (0.143184)
	hyp (0.142837)
	ssp (0.13552)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	pgl (0.118483)