Non-Coding RNA Search

Ss1.1-reje28b_k1.5

Sequence:


               
               CAAAGACAACCTTACCCAGCACAAAAGAATTCACACTGGAGAGATGCCTTATAAATGTCA
TGAATGTGGAAAACACTTCAGTCATCACTCCAACCTAATTGTACACCAGAGAGTTCATAA
TGGAGCAAGGCCTTATAAGTGCAACAATTGTGGGAAAGTCTTCAGACACAAATCTACACT
TGTTCAGCATGAGAGTATCCATACTGGAGAAAACCCTTATGTTTGCAGTGATTGTGGGAA
ATCCTTTGGTCACAAATACACCCTCATTAAACACCAGAGAATTCATACTGAGACAAGGCC
TTTTGAGTGCGTTGAATGTGGGAAATTCTTTAGCCGAAGCTCTGACTTTATTGCACACCA
GAGAGTTCACACGGGTGAAAGGCCTTTTGTTTGCAGCAAATGTGGGAAAGATTTCATCAG
AACCTCCCACCTTGTTCGGCACCAAAAAGTTCATACTGGAGAAAGGCCGTATGAATGCAA
TGAATGTGGAAAATCTTATAGCTTAAGCTCCCACCTCATTAGGCACCAGAAAGTTCACAC
TGCAGGAAGGCTTTAGGAATGCTTTCAACACGATGGGACTCATGGAGAGGAGCTCTGTGA
CTCCCTTTGGAGAAGGAGACATCAATCTTATGTTGAACCTCATATATCTGAACATTAACA
CTGGGAAGATACTTTATGAATGCCAGATACAGGGGAAGCTTTCAGGGTCTAATTTGCACT
TTCAGACCTGCTCAGGTACCTTGCCTAATTTGTCGATGTCAAAGCCTATGGCTGAAACCA
TCTCAACTCTACCAGCTTAGTTACCCAAAGATCCTTATGAGAAGCAGACTTTGTACTCTC
TCTCTCCAATTCCTGGAGGGAATTTTAAGAAACCTGGGTTAAATGAGAGTCCTCATTTCC
TCCCCTCTGACTTGGAAAAGCAGTGGACATGATCCATCTTCAGCCAAGAGGACCTGAGCT
GTGTTCTCGTAGCAGAAAAGGTTTATTCTCTTCTTGGACATTGTTGGTCTCTTGTAATAA
ATACTCGTGACAGATTTTTCCAGTCTCCAAGTCACCCAACCTGGCTGACCCACTTGTCTC
ATGTTGCTCTGGTTTGTGAGATAATAAAGACCTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGACAACCTTACCCAGCACAAAAGAATTCACACTGGAGAGATGCCTTATAAATGTCA
TGAATGTGGAAAACACTTCAGTCATCACTCCAACCTAATTGTACACCAGAGAGTTCATAA
TGGAGCAAGGCCTTATAAGTGCAACAATTGTGGGAAAGTCTTCAGACACAAATCTACACT
TGTTCAGCATGAGAGTATCCATACTGGAGAAAACCCTTATGTTTGCAGTGATTGTGGGAA
ATCCTTTGGTCACAAATACACCCTCATTAAACACCAGAGAATTCATACTGAGACAAGGCC
TTTTGAGTGCGTTGAATGTGGGAAATTCTTTAGCCGAAGCTCTGACTTTATTGCACACCA
GAGAGTTCACACGGGTGAAAGGCCTTTTGTTTGCAGCAAATGTGGGAAAGATTTCATCAG
AACCTCCCACCTTGTTCGGCACCAAAAAGTTCATACTGGAGAAAGGCCGTATGAATGCAA
TGAATGTGGAAAATCTTATAGCTTAAGCTCCCACCTCATTAGGCACCAGAAAGTTCACAC
TGCAGGAAGGCTTTAGGAATGCTTTCAACACGATGGGACTCATGGAGAGGAGCTCTGTGA
CTCCCTTTGGAGAAGGAGACATCAATCTTATGTTGAACCTCATATATCTGAACATTAACA
CTGGGAAGATACTTTATGAATGCCAGATACAGGGGAAGCTTTCAGGGTCTAATTTGCACT
TTCAGACCTGCTCAGGTACCTTGCCTAATTTGTCGATGTCAAAGCCTATGGCTGAAACCA
TCTCAACTCTACCAGCTTAGTTACCCAAAGATCCTTATGAGAAGCAGACTTTGTACTCTC
TCTCTCCAATTCCTGGAGGGAATTTTAAGAAACCTGGGTTAAATGAGAGTCCTCATTTCC
TCCCCTCTGACTTGGAAAAGCAGTGGACATGATCCATCTTCAGCCAAGAGGACCTGAGCT
GTGTTCTCGTAGCAGAAAAGGTTTATTCTCTTCTTGGACATTGTTGGTCTCTTGTAATAA
ATACTCGTGACAGATTTTTCCAGTCTCCAAGTCACCCAACCTGGCTGACCCACTTGTCTC
ATGTTGCTCTGGTTTGTGAGATAATAAAGACCTTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1731410|sp|P52741|ZN134_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1731410|sp|P52741|ZN134_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               161-679, + strand, RNAz p=0.930321
               

               
               898-1002, - strand, RNAz p=0.773998

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-679, + strand, RNAz p=0.930321
               

               
               898-1002, - strand, RNAz p=0.773998

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-880, gnl|bosTau2|chr18 (55066895-55066017)
               


               
               2-568, gnl|bosTau2|chr17 (22552050-22551483)
               


               
               8-562, gnl|bosTau2|chr11 (74554886-74554332)
               

               
               8-562, gnl|Hg17|chr9 (127286320-127286874)
               

               
               8-562, gnl|Mm7|chr11 (62796088-62795534)
               


               
               9-553, gnl|bosTau2|chr10 (8996710-8996165)
               

               
               9-553, gnl|Hg17|chr19 (42818515-42817886)
               

               
               9-553, gnl|Mm7|chr2 (127310141-127309672)
               


               
               10-548, gnl|bosTau2|chr10 (8996625-8996087)
               

               
               10-548, gnl|Hg17|chr19 (42818430-42817808)
               

               
               10-548, gnl|Mm7|chr2 (127310056-127309602)
               


               
               27-542, gnl|bosTau2|chr10 (8996776-8996261)
               

               
               27-542, gnl|Hg17|chr19 (42818581-42817982)
               

               
               27-542, gnl|Mm7|chr2 (127310207-127309692)
               


               
               898-1116, gnl|bosTau2|chr1 (23885649-23885438)
               

               
               898-1116, gnl|Hg17|chr19 (62824870-62825095)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-880, gnl|bosTau2|chr18 (55066895-55066017)
               


               
               2-568, gnl|bosTau2|chr17 (22552050-22551483)
               


               
               8-562, gnl|bosTau2|chr11 (74554886-74554332)
               

               
               8-562, gnl|Hg17|chr9 (127286320-127286874)
               

               
               8-562, gnl|Mm7|chr11 (62796088-62795534)
               


               
               9-553, gnl|bosTau2|chr10 (8996710-8996165)
               

               
               9-553, gnl|Hg17|chr19 (42818515-42817886)
               

               
               9-553, gnl|Mm7|chr2 (127310141-127309672)
               


               
               10-548, gnl|bosTau2|chr10 (8996625-8996087)
               

               
               10-548, gnl|Hg17|chr19 (42818430-42817808)
               

               
               10-548, gnl|Mm7|chr2 (127310056-127309602)
               


               
               27-542, gnl|bosTau2|chr10 (8996776-8996261)
               

               
               27-542, gnl|Hg17|chr19 (42818581-42817982)
               

               
               27-542, gnl|Mm7|chr2 (127310207-127309692)
               


               
               898-1116, gnl|bosTau2|chr1 (23885649-23885438)
               

               
               898-1116, gnl|Hg17|chr19 (62824870-62825095)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               pro (0.512033)
               

               
               jca (0.22792)
               

               
               hea (0.204499)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               ski (0.146735)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               jca (0.22792)
               

               
               hea (0.204499)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               ski (0.146735)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	161-679, + strand, RNAz p=0.930321
	898-1002, - strand, RNAz p=0.773998

	1-880, gnl\|bosTau2\|chr18 (55066895-55066017)

	2-568, gnl\|bosTau2\|chr17 (22552050-22551483)

	8-562, gnl\|bosTau2\|chr11 (74554886-74554332)
	8-562, gnl\|Hg17\|chr9 (127286320-127286874)
	8-562, gnl\|Mm7\|chr11 (62796088-62795534)

	9-553, gnl\|bosTau2\|chr10 (8996710-8996165)
	9-553, gnl\|Hg17\|chr19 (42818515-42817886)
	9-553, gnl\|Mm7\|chr2 (127310141-127309672)

	10-548, gnl\|bosTau2\|chr10 (8996625-8996087)
	10-548, gnl\|Hg17\|chr19 (42818430-42817808)
	10-548, gnl\|Mm7\|chr2 (127310056-127309602)

	27-542, gnl\|bosTau2\|chr10 (8996776-8996261)
	27-542, gnl\|Hg17\|chr19 (42818581-42817982)
	27-542, gnl\|Mm7\|chr2 (127310207-127309692)

	898-1116, gnl\|bosTau2\|chr1 (23885649-23885438)
	898-1116, gnl\|Hg17\|chr19 (62824870-62825095)

	pro (0.512033)
	jca (0.22792)
	hea (0.204499)
	ill (0.175593)
	duo (0.172801)
	ski (0.146735)
	cbl (0.114797)
	spc (0.113366)
	eje (0.0988338)