Non-Coding RNA Search

Ss1.1-reje29b_h20.5

Sequence:


               
               CATGCATATAAGCACATGTAGACATATATATAGCTTTCAAAAATGTGTTCCTTCTAAGAT
TTCAAATGACAAGTTATCAATTTCTTGATGTCCTATTTTTTTAAACAAAATTGGAAAGAT
AGTATTGGCTTTTACTTGTTCCCAAGCAGACTGAAACAAATGCCTATTAGACATCACAAT
GTGGGAGTTCCCGTCATGGCGCAGCGGAAACGAGTCTGACTAGGAACCATGAGGTTGTGG
GTTTGATGCCTGGCCTCGCTCAGTGGGTTAAGGATCTGGCGTTGCCATGAGCTGTGGTGT
AGGCTGGCGGCTACAGCTCCGATTAGACCCCTAGCCTGGACACCTCCGTATGCCTTGGGT
GTGGTACTGAAAAGACAAAAAAAAAGACAAAAAAAAAAAAAAAAAAATCACAATGTGTAT
TCCAGGAGCTGAGCCTTCTCCCCTGCCACATTACGAAGTGTGCATTCTCTAGTAGTAGTT
CTTGGTGGACTAAGTCTCTCTGGGCAATGAATATCTCATCTTGATTTTTCACGGTAGATT
TAAGAGATAATGTGTGTAAATCAGTAGCACAATGGAACATTACAGGCTTGTTATTCACTA
GGAGTGTGAAAAATAAGCGAGTGTAGACTTCTCTTCAAAGGCAGGTCCAGAGATACAGCA
AACAGTTGATCTGTGGAGCTGAATTCCCTCTGGTTCCAGGACTTTGCTGCTGCTCAGCGC
TCTCCTGCTATAAACAGTCCGACCAGGTGACTCCCTGAGTGGAAAAACCTGTTCAGTGAC
TTTGTTTTTTAACTCAGGAGAGTTTCTGCATTGTGCCTCTCCTGCTCTGTAAATTTTAAG
AGTTGAAAAGTCTTTAGGAATTCTTGTAAAAAGCACATTTTATCTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGCATATAAGCACATGTAGACATATATATAGCTTTCAAAAATGTGTTCCTTCTAAGAT
TTCAAATGACAAGTTATCAATTTCTTGATGTCCTATTTTTTTAAACAAAATTGGAAAGAT
AGTATTGGCTTTTACTTGTTCCCAAGCAGACTGAAACAAATGCCTATTAGACATCACAAT
GTGGGAGTTCCCGTCATGGCGCAGCGGAAACGAGTCTGACTAGGAACCATGAGGTTGTGG
GTTTGATGCCTGGCCTCGCTCAGTGGGTTAAGGATCTGGCGTTGCCATGAGCTGTGGTGT
AGGCTGGCGGCTACAGCTCCGATTAGACCCCTAGCCTGGACACCTCCGTATGCCTTGGGT
GTGGTACTGAAAAGACAAAAAAAAAGACAAAAAAAAAAAAAAAAAAATCACAATGTGTAT
TCCAGGAGCTGAGCCTTCTCCCCTGCCACATTACGAAGTGTGCATTCTCTAGTAGTAGTT
CTTGGTGGACTAAGTCTCTCTGGGCAATGAATATCTCATCTTGATTTTTCACGGTAGATT
TAAGAGATAATGTGTGTAAATCAGTAGCACAATGGAACATTACAGGCTTGTTATTCACTA
GGAGTGTGAAAAATAAGCGAGTGTAGACTTCTCTTCAAAGGCAGGTCCAGAGATACAGCA
AACAGTTGATCTGTGGAGCTGAATTCCCTCTGGTTCCAGGACTTTGCTGCTGCTCAGCGC
TCTCCTGCTATAAACAGTCCGACCAGGTGACTCCCTGAGTGGAAAAACCTGTTCAGTGAC
TTTGTTTTTTAACTCAGGAGAGTTTCTGCATTGTGCCTCTCCTGCTCTGTAAATTTTAAG
AGTTGAAAAGTCTTTAGGAATTCTTGTAAAAAGCACATTTTATCTCAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               699-854, - strand, RNAz p=0.952679

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               699-854, - strand, RNAz p=0.952679

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-183, gnl|bosTau2|chr5 (22944280-22944460)
               

               
               1-183, gnl|Hg17|chr12 (48883012-48882828)
               


               
               405-888, gnl|bosTau2|chr5 (22944448-22944932)
               

               
               405-888, gnl|Hg17|chr12 (48882840-48882341)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-183, gnl|bosTau2|chr5 (22944280-22944460)
               

               
               1-183, gnl|Hg17|chr12 (48883012-48882828)
               


               
               405-888, gnl|bosTau2|chr5 (22944448-22944932)
               

               
               405-888, gnl|Hg17|chr12 (48882840-48882341)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	1-183, gnl\|bosTau2\|chr5 (22944280-22944460)
	1-183, gnl\|Hg17\|chr12 (48883012-48882828)

	405-888, gnl\|bosTau2\|chr5 (22944448-22944932)
	405-888, gnl\|Hg17\|chr12 (48882840-48882341)