Non-Coding RNA Search

Ss1.1-reje30b_h23.5

Sequence:


               
               GCTTGGTGTGTTTGTGCCGGATCCATCCGGTGCCATCCGAACTCTGGCCGCCTCGCGGGG
GTCAGGATCGGGCTGCGCGGCTGCGGTAGCCTCCAACAGGCCTCCGGAACCGCCAGATAT
GGGGGCGCGGGGCAGGCCTGGTGGGGGTTGGGACGACCCGGGGCGGGGAAGGCCTGTGTC
GGCCCGCATGTCTTAGGCGAGCCCCTGTAGCCCCGGGCCGTGCTTGCCGCCCTGCCTGGA
ACCGGCCCGAGAAGATCTGTTCCTGTCGGCTTTCGTACTCCAGAGCTTCGCGCGATTCTC
GGCGGGAATTGCGGGCCCCGTGACCCCGCTGCATGGGTGGGAGGTGGGTGTCGGGGTCTT
GTTCCTTTCCGAAGAGCCGACGGGATGGCGGAAGTAGAGCAGAAGAAGAAGCGGACCTTC
CGCAAGTTCACCTACCGCGGCGTGGACCTCGACCAGCTGCTGGACATGTCTTACGAGCAG
CTGATGCAGCTGTACAGCGCACGGCAGCGGCGGCGGCTGAACCGAGGTCTGAGGAGGAAG
CAGCACTCGCTGCTCAAGCGCCTGCGCAAGGCCAAGAAGGAGGCGCCACCCATGGAGAAG
CCAGAGGTAGTGAAGACGCACCTGCGAGACATGATCATCCTGCCCGAGATGGTGGGCAGC
ATGGTAGGTGTCTACAATGGCAAGACCTTCAACCAGGTGGAGATCAAGCCTGAGATGATT
GGACACTACCTAGGCGAATTCTCCATCACGTACAAGCCTGTGAAGCATGGCCGGCCTGGT
ATCGGGGCCACGCACTCCTCCCGCTTCATCCCCCTCAAGTAGTAGCCTGCTGGCCAATAA
AGGCAGCCTTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTGGTGTGTTTGTGCCGGATCCATCCGGTGCCATCCGAACTCTGGCCGCCTCGCGGGG
GTCAGGATCGGGCTGCGCGGCTGCGGTAGCCTCCAACAGGCCTCCGGAACCGCCAGATAT
GGGGGCGCGGGGCAGGCCTGGTGGGGGTTGGGACGACCCGGGGCGGGGAAGGCCTGTGTC
GGCCCGCATGTCTTAGGCGAGCCCCTGTAGCCCCGGGCCGTGCTTGCCGCCCTGCCTGGA
ACCGGCCCGAGAAGATCTGTTCCTGTCGGCTTTCGTACTCCAGAGCTTCGCGCGATTCTC
GGCGGGAATTGCGGGCCCCGTGACCCCGCTGCATGGGTGGGAGGTGGGTGTCGGGGTCTT
GTTCCTTTCCGAAGAGCCGACGGGATGGCGGAAGTAGAGCAGAAGAAGAAGCGGACCTTC
CGCAAGTTCACCTACCGCGGCGTGGACCTCGACCAGCTGCTGGACATGTCTTACGAGCAG
CTGATGCAGCTGTACAGCGCACGGCAGCGGCGGCGGCTGAACCGAGGTCTGAGGAGGAAG
CAGCACTCGCTGCTCAAGCGCCTGCGCAAGGCCAAGAAGGAGGCGCCACCCATGGAGAAG
CCAGAGGTAGTGAAGACGCACCTGCGAGACATGATCATCCTGCCCGAGATGGTGGGCAGC
ATGGTAGGTGTCTACAATGGCAAGACCTTCAACCAGGTGGAGATCAAGCCTGAGATGATT
GGACACTACCTAGGCGAATTCTCCATCACGTACAAGCCTGTGAAGCATGGCCGGCCTGGT
ATCGGGGCCACGCACTCCTCCCGCTTCATCCCCCTCAAGTAGTAGCCTGCTGGCCAATAA
AGGCAGCCTTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q71U13_LAPHA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q71U13_LAPHA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               9-473, gnl|bosTau2|chr7 (29044469-29044019)
               

               
               9-473, gnl|Hg17|chr19 (1389448-1389949)
               


               
               656-920, gnl|bosTau2|chr11 (29273133-29273385)
               

               
               656-920, gnl|Mm7|chr6 (122681388-122681621)
               


               
               661-869, gnl|bosTau2|chr10 (53633660-53633468)
               

               
               661-869, gnl|Mm7|chr6 (122681393-122681575)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-473, gnl|bosTau2|chr7 (29044469-29044019)
               

               
               9-473, gnl|Hg17|chr19 (1389448-1389949)
               


               
               656-920, gnl|bosTau2|chr11 (29273133-29273385)
               

               
               656-920, gnl|Mm7|chr6 (122681388-122681621)
               


               
               661-869, gnl|bosTau2|chr10 (53633660-53633468)
               

               
               661-869, gnl|Mm7|chr6 (122681393-122681575)

Expressed library(ies): 70 entry(ies)

More info

Expressed library(ies): 70 entry(ies)

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               mcp (11.0921)
               

               
               eje (7.21486)
               

               
               ese (5.9456)
               

               
               eep (5.39282)
               

               
               nlu (5.17539)
               

               
               elu (5.00963)
               

               
               fty (4.74767)
               

               
               cly (4.70503)
               

               
               lnt (4.69617)
               

               
               col (4.68019)
               

               
               csp (4.6744)
               

               
               amn (4.59482)
               

               
               cag (4.53583)
               

               
               nca (4.51684)
               

               
               hlv (4.4562)
               

               
               fli (3.65186)
               

               
               pty (3.56786)
               

               
               nje (3.48432)
               

               
               cga (3.34915)
               

               
               eru (3.2413)
               

               
               ece (3.21027)
               

               
               ill (3.16067)
               

               
               ton (3.159)
               

               
               nco (3.07294)
               

               
               med (3.02255)
               

               
               duo (2.93762)
               

               
               cov (2.90736)
               

               
               nbm (2.88041)
               

               
               cje (2.64375)
               

               
               nep (2.57495)
               

               
               ecc (2.53077)
               

               
               ebs (2.36602)
               

               
               nms (2.35244)
               

               
               jca (2.16524)
               

               
               nmm (2.12483)
               

               
               cst (2.10055)
               

               
               fce (1.90114)
               

               
               eye (1.87553)
               

               
               hyp (1.71404)
               

               
               cli (1.68093)
               

               
               eli (1.51814)
               

               
               mas (1.26183)
               

               
               fbs (1.22742)
               

               
               che (1.22683)
               

               
               jej (0.989218)
               

               
               ute (0.796707)
               

               
               cut (0.679694)
               

               
               fhi (0.678311)
               

               
               cki (0.660939)
               

               
               fat (0.58971)
               

               
               ssp (0.542079)
               

               
               rec (0.519211)
               

               
               cbl (0.45919)
               

               
               fcc (0.39557)
               

               
               ova (0.387397)
               

               
               cmu (0.372787)
               

               
               pgl (0.35545)
               

               
               sin (0.349895)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               pla (0.267344)
               

               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               lun (0.150489)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 70 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (11.0921)
               

               
               eje (7.21486)
               

               
               ese (5.9456)
               

               
               eep (5.39282)
               

               
               nlu (5.17539)
               

               
               elu (5.00963)
               

               
               fty (4.74767)
               

               
               cly (4.70503)
               

               
               lnt (4.69617)
               

               
               col (4.68019)
               

               
               csp (4.6744)
               

               
               amn (4.59482)
               

               
               cag (4.53583)
               

               
               nca (4.51684)
               

               
               hlv (4.4562)
               

               
               fli (3.65186)
               

               
               pty (3.56786)
               

               
               nje (3.48432)
               

               
               cga (3.34915)
               

               
               eru (3.2413)
               

               
               ece (3.21027)
               

               
               ill (3.16067)
               

               
               ton (3.159)
               

               
               nco (3.07294)
               

               
               med (3.02255)
               

               
               duo (2.93762)
               

               
               cov (2.90736)
               

               
               nbm (2.88041)
               

               
               cje (2.64375)
               

               
               nep (2.57495)
               

               
               ecc (2.53077)
               

               
               ebs (2.36602)
               

               
               nms (2.35244)
               

               
               jca (2.16524)
               

               
               nmm (2.12483)
               

               
               cst (2.10055)
               

               
               fce (1.90114)
               

               
               eye (1.87553)
               

               
               hyp (1.71404)
               

               
               cli (1.68093)
               

               
               eli (1.51814)
               

               
               mas (1.26183)
               

               
               fbs (1.22742)
               

               
               che (1.22683)
               

               
               jej (0.989218)
               

               
               ute (0.796707)
               

               
               cut (0.679694)
               

               
               fhi (0.678311)
               

               
               cki (0.660939)
               

               
               fat (0.58971)
               

               
               ssp (0.542079)
               

               
               rec (0.519211)
               

               
               cbl (0.45919)
               

               
               fcc (0.39557)
               

               
               ova (0.387397)
               

               
               cmu (0.372787)
               

               
               pgl (0.35545)
               

               
               sin (0.349895)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               pla (0.267344)
               

               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               lun (0.150489)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	9-473, gnl\|bosTau2\|chr7 (29044469-29044019)
	9-473, gnl\|Hg17\|chr19 (1389448-1389949)

	656-920, gnl\|bosTau2\|chr11 (29273133-29273385)
	656-920, gnl\|Mm7\|chr6 (122681388-122681621)

	661-869, gnl\|bosTau2\|chr10 (53633660-53633468)
	661-869, gnl\|Mm7\|chr6 (122681393-122681575)

	mcp (11.0921)
	eje (7.21486)
	ese (5.9456)
	eep (5.39282)
	nlu (5.17539)
	elu (5.00963)
	fty (4.74767)
	cly (4.70503)
	lnt (4.69617)
	col (4.68019)
	csp (4.6744)
	amn (4.59482)
	cag (4.53583)
	nca (4.51684)
	hlv (4.4562)
	fli (3.65186)
	pty (3.56786)
	nje (3.48432)
	cga (3.34915)
	eru (3.2413)
	ece (3.21027)
	ill (3.16067)
	ton (3.159)
	nco (3.07294)
	med (3.02255)
	duo (2.93762)
	cov (2.90736)
	nbm (2.88041)
	cje (2.64375)
	nep (2.57495)
	ecc (2.53077)
	ebs (2.36602)
	nms (2.35244)
	jca (2.16524)
	nmm (2.12483)
	cst (2.10055)
	fce (1.90114)
	eye (1.87553)
	hyp (1.71404)
	cli (1.68093)
	eli (1.51814)
	mas (1.26183)
	fbs (1.22742)
	che (1.22683)
	jej (0.989218)
	ute (0.796707)
	cut (0.679694)
	fhi (0.678311)
	cki (0.660939)
	fat (0.58971)
	ssp (0.542079)
	rec (0.519211)
	cbl (0.45919)
	fcc (0.39557)
	ova (0.387397)
	cmu (0.372787)
	pgl (0.35545)
	sin (0.349895)
	cty (0.31224)
	sme (0.305437)
	csk (0.281492)
	pla (0.267344)
	thg (0.253582)
	aor (0.195274)
	sag (0.182715)
	sto (0.179824)
	lun (0.150489)
	bla (0.124347)
	tra (0.123092)
	spc (0.113366)