Non-Coding RNA Search

Ss1.1-reje33b_h21.5

Sequence:


               
               GAGATGAAGCCAGAAAGGTGCGGTGATACTGTTCCCCGGAGGTAACCAGCCCCTCGGAGG
AGAGAGACGGAGACCCCACGCCCGGCTCGTGTATTTATTACCGTTACACTCTCAGTTACC
TCCCTGCTGGCACCTGCCCTCTATTTATTAGCCAAGTGTATCCCTGCTGAATGACTCACT
CCCTTCAAGATGAGGGGCAGGAAGGGACAGGACCCTCAGGAATTCAGTGCCTTAAACAGA
ACGTGAGAGAAAGAAAGAAGACAGATCCACGCGTGCGTCATCTGGGGAAGAAGCAAGACT
TGTGGCTTTGTGAGGGGCGTGTCACACCCCAGAGGCCTGAGGGTCTCCAGGGTGCTGGAG
AGGGAGGGACGGGGGGGACATGCCACCTGTCCCCAGGGCCTTGGGCTCTGCCGGGACCAG
CAGCCCTTGCCTGGGGAGCTCCCTGCCGGGATGAGGGTGGAGGAGCCTTCTCTGGCCGCC
GTGGCCCCTGCCGGGAGGGCGGGCAAGCAGCAGCCCCGCGCCCTGGAGACAGGATGTTCA
GCTCTGGAGACCAGTGGTTGCCTGGGGGCCTTTGCCACTCCTTGTCCCCTAGGTCTCGCC
TCATATCTTACCACCGCTTGTGCTGGGACATTGCTCTTTATGCCAAGGCATCCCCACCTG
CCCCTCTCGGGGACGCAGGCAGAGAGGGCCCAGGCTGGTCATGGAGCAAGCTGTCCCCGC
GAGGCCGTCTGACCGCCAAGCCAGATTCTCTTGAATAAAGTACTCTAGTCTGGAAAAAAA
AAAAAAAAAAAAAAAAGGGGGGGGGGCCCTTTAAAAAATTCCCTTGGGGGGGCCAAATTT
ACCCCCCCCCCATTTTTTTTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATGAAGCCAGAAAGGTGCGGTGATACTGTTCCCCGGAGGTAACCAGCCCCTCGGAGG
AGAGAGACGGAGACCCCACGCCCGGCTCGTGTATTTATTACCGTTACACTCTCAGTTACC
TCCCTGCTGGCACCTGCCCTCTATTTATTAGCCAAGTGTATCCCTGCTGAATGACTCACT
CCCTTCAAGATGAGGGGCAGGAAGGGACAGGACCCTCAGGAATTCAGTGCCTTAAACAGA
ACGTGAGAGAAAGAAAGAAGACAGATCCACGCGTGCGTCATCTGGGGAAGAAGCAAGACT
TGTGGCTTTGTGAGGGGCGTGTCACACCCCAGAGGCCTGAGGGTCTCCAGGGTGCTGGAG
AGGGAGGGACGGGGGGGACATGCCACCTGTCCCCAGGGCCTTGGGCTCTGCCGGGACCAG
CAGCCCTTGCCTGGGGAGCTCCCTGCCGGGATGAGGGTGGAGGAGCCTTCTCTGGCCGCC
GTGGCCCCTGCCGGGAGGGCGGGCAAGCAGCAGCCCCGCGCCCTGGAGACAGGATGTTCA
GCTCTGGAGACCAGTGGTTGCCTGGGGGCCTTTGCCACTCCTTGTCCCCTAGGTCTCGCC
TCATATCTTACCACCGCTTGTGCTGGGACATTGCTCTTTATGCCAAGGCATCCCCACCTG
CCCCTCTCGGGGACGCAGGCAGAGAGGGCCCAGGCTGGTCATGGAGCAAGCTGTCCCCGC
GAGGCCGTCTGACCGCCAAGCCAGATTCTCTTGAATAAAGTACTCTAGTCTGGAAAAAAA
AAAAAAAAAAAAAAAAGGGGGGGGGGCCCTTTAAAAAATTCCCTTGGGGGGGCCAAATTT
ACCCCCCCCCCATTTTTTTTGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               255-440, + strand, RNAz p=0.999252

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               255-440, + strand, RNAz p=0.999252

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of CR611238, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR611238, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-775, gnl|bosTau2|chr10 (56563326-56562580)
               

               
               16-775, gnl|Hg17|chr14 (74479191-74478291)
               

               
               16-775, gnl|Mm7|chr12 (83167254-83166479)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-775, gnl|bosTau2|chr10 (56563326-56562580)
               

               
               16-775, gnl|Hg17|chr14 (74479191-74478291)
               

               
               16-775, gnl|Mm7|chr12 (83167254-83166479)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	16-775, gnl\|bosTau2\|chr10 (56563326-56562580)
	16-775, gnl\|Hg17\|chr14 (74479191-74478291)
	16-775, gnl\|Mm7\|chr12 (83167254-83166479)