Ss1.1-reje33b_i24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTAAAGTGGAACGTGTCCGGTATAGCCGAGTTGAAGATCCCACTGATGACTATGGGACAG AGGATTATGCAGGTCCCTGTGACCCTGAGTGCAGTGAGGTAGGCTGTGATGGGCCAGGAC CAGACCACTGCAATGACTGTTTGCACTACTACTACAAGCTGAAAAACAACACCAGGATCT GTGTCTCTAGCTGCCCCCCTGGCCACTACCACGCCGACAAGAAGCGATGCAGAAAGTGTG CCCCCAACTGTGAGACCTGCTTTGGGAGCCATGGGGACCAGTGCTTGTCCTGTAAATATG GGTACTTCCTGAATGAAGAAACCAACAGCTGTGTCACCCACTGCCCTGATGGATCATATC AGGATCCCAAGAAAAACCTTTGCCGGAAATGCAATGAAAACTGCAAGACATGCACTGAAT CAGACAACTGTACAGAATGTAGGGAGGGGTTAAGCCTGCAGGGATCCCGGTGTTCTGTTG CCTGTGATGATGGACGGTACTTCAACGGCCAGGACTGCCAGCCTTGCCACCGCTTCTGCG CCACCTGTGCTGGAGCAGGCGCTGATGGGTGTATTAACTGCACAGAGGGCTACTTCATGG AGGATGGGAGATGTGTGCAAAGCTGTAGTATCAGCTATTACTTCGACCACTCTTCAGAAA ATGGCTTCAAATCCTGCAAAAAATGTGATGCCAGCTGTTTGACATGCAATGGTCCAGGGT TCAAGAACTGTACCAGCTGCCCCAGTGGATATCTCTTAGACTTAGGAATGTGTCAAATGG GAGCCATCTGCAAGGACGCAACGGAAGAGTCCTGGGCGGAAGGAGGCTTCTGTATGCTAG TGAAAAAGAACAATCTGTGCCAACGGAAGGTTCTTCAACAACTTTGCTGCAAAACATGTA CATTCCAAGGCTAAGCTGCCATCCTAGATGTCTTTGTTCCTGTAGACTTATAGATTACTC CATATTACTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTAAAGTGGAACGTGTCCGGTATAGCCGAGTTGAAGATCCCACTGATGACTATGGGACAG AGGATTATGCAGGTCCCTGTGACCCTGAGTGCAGTGAGGTAGGCTGTGATGGGCCAGGAC CAGACCACTGCAATGACTGTTTGCACTACTACTACAAGCTGAAAAACAACACCAGGATCT GTGTCTCTAGCTGCCCCCCTGGCCACTACCACGCCGACAAGAAGCGATGCAGAAAGTGTG CCCCCAACTGTGAGACCTGCTTTGGGAGCCATGGGGACCAGTGCTTGTCCTGTAAATATG GGTACTTCCTGAATGAAGAAACCAACAGCTGTGTCACCCACTGCCCTGATGGATCATATC AGGATCCCAAGAAAAACCTTTGCCGGAAATGCAATGAAAACTGCAAGACATGCACTGAAT CAGACAACTGTACAGAATGTAGGGAGGGGTTAAGCCTGCAGGGATCCCGGTGTTCTGTTG CCTGTGATGATGGACGGTACTTCAACGGCCAGGACTGCCAGCCTTGCCACCGCTTCTGCG CCACCTGTGCTGGAGCAGGCGCTGATGGGTGTATTAACTGCACAGAGGGCTACTTCATGG AGGATGGGAGATGTGTGCAAAGCTGTAGTATCAGCTATTACTTCGACCACTCTTCAGAAA ATGGCTTCAAATCCTGCAAAAAATGTGATGCCAGCTGTTTGACATGCAATGGTCCAGGGT TCAAGAACTGTACCAGCTGCCCCAGTGGATATCTCTTAGACTTAGGAATGTGTCAAATGG GAGCCATCTGCAAGGACGCAACGGAAGAGTCCTGGGCGGAAGGAGGCTTCTGTATGCTAG TGAAAAAGAACAATCTGTGCCAACGGAAGGTTCTTCAACAACTTTGCTGCAAAACATGTA CATTCCAAGGCTAAGCTGCCATCCTAGATGTCTTTGTTCCTGTAGACTTATAGATTACTC CATATTACTAAA |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 166-369, gnl|bosTau2|chr8 (24879282-24879080) | |
| 166-369, gnl|canFam2|chr1 (85331416-85331224) | |
| 166-369, gnl|danRer3|chr23 (25290364-25290165) | |
| 166-369, gnl|echTel1|scaffold_174671 (2179-1987) | |
| 166-369, gnl|fr1|chrUn (48635457-48635649) | |
| 166-369, gnl|galGal2|chrZ (17737544-17737730) | |
| 166-369, gnl|hg17|chr9 (76025850-76026042) | |
| 166-369, gnl|Hg17|chr9 (76025859-76026061) | |
| 166-369, gnl|loxAfr1|scaffold_4287 (44143-43951) | |
| 166-369, gnl|mm7|chr19 (17273565-17273373) | |
| 166-369, gnl|Mm7|chr19 (17273554-17273352) | |
| 166-369, gnl|monDom2|scaffold_17 (10547090-10546895) | |
| 166-369, gnl|oryCun1|scaffold_192343 (7468-7276) | |
| 166-369, gnl|panTro1|chr11 (59910922-59911114) | |
| 166-369, gnl|rheMac2|chr15 (84945366-84945558) | |
| 166-369, gnl|rn3|chr1 (221296526-221296334) | |
| 166-369, gnl|tetNig1|chr12 (7100330-7100522) | |
| 166-369, gnl|xenTro1|scaffold_1320 (49018-49207) | |
| 552-682, gnl|bosTau2|chr20 (37561913-37562043) | |
| 552-682, gnl|canFam2|chr1 (85316465-85316293) | |
| 552-682, gnl|dasNov1|scaffold_596 (84521-84351) | |
| 552-682, gnl|fr1|chrUn (48638130-48638309) | |
| 552-682, gnl|galGal2|chrZ (17743057-17743195) | |
| 552-682, gnl|hg17|chr9 (76033550-76033722) | |
| 552-682, gnl|Hg17|chr9 (76033563-76033693) | |
| 552-682, gnl|loxAfr1|scaffold_4287 (33348-33176) | |
| 552-682, gnl|mm7|chr19 (17265783-17265614) | |
| 552-682, gnl|Mm7|chr19 (17265768-17265638) | |
| 552-682, gnl|monDom2|scaffold_17 (10536341-10536171) | |
| 552-682, gnl|oryCun1|scaffold_199109 (76361-76189) | |
| 552-682, gnl|panTro1|chr11 (59918707-59918879) | |
| 552-682, gnl|rheMac2|chr15 (84953302-84953474) | |
| 552-682, gnl|rn3|chr1 (221288531-221288371) | |
| 552-682, gnl|tetNig1|chr12 (7102545-7102696) | |
| 552-682, gnl|xenTro1|scaffold_1320 (54724-54884) | |
| 798-970, gnl|bosTau2|chr20 (37565761-37565933) | |
| 798-970, gnl|Hg17|chr9 (76037706-76037878) | |
| 798-970, gnl|Mm7|chr19 (17261758-17261588) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 166-369, gnl|bosTau2|chr8 (24879282-24879080) | |
| 166-369, gnl|canFam2|chr1 (85331416-85331224) | |
| 166-369, gnl|danRer3|chr23 (25290364-25290165) | |
| 166-369, gnl|echTel1|scaffold_174671 (2179-1987) | |
| 166-369, gnl|fr1|chrUn (48635457-48635649) | |
| 166-369, gnl|galGal2|chrZ (17737544-17737730) | |
| 166-369, gnl|hg17|chr9 (76025850-76026042) | |
| 166-369, gnl|Hg17|chr9 (76025859-76026061) | |
| 166-369, gnl|loxAfr1|scaffold_4287 (44143-43951) | |
| 166-369, gnl|mm7|chr19 (17273565-17273373) | |
| 166-369, gnl|Mm7|chr19 (17273554-17273352) | |
| 166-369, gnl|monDom2|scaffold_17 (10547090-10546895) | |
| 166-369, gnl|oryCun1|scaffold_192343 (7468-7276) | |
| 166-369, gnl|panTro1|chr11 (59910922-59911114) | |
| 166-369, gnl|rheMac2|chr15 (84945366-84945558) | |
| 166-369, gnl|rn3|chr1 (221296526-221296334) | |
| 166-369, gnl|tetNig1|chr12 (7100330-7100522) | |
| 166-369, gnl|xenTro1|scaffold_1320 (49018-49207) | |
| 552-682, gnl|bosTau2|chr20 (37561913-37562043) | |
| 552-682, gnl|canFam2|chr1 (85316465-85316293) | |
| 552-682, gnl|dasNov1|scaffold_596 (84521-84351) | |
| 552-682, gnl|fr1|chrUn (48638130-48638309) | |
| 552-682, gnl|galGal2|chrZ (17743057-17743195) | |
| 552-682, gnl|hg17|chr9 (76033550-76033722) | |
| 552-682, gnl|Hg17|chr9 (76033563-76033693) | |
| 552-682, gnl|loxAfr1|scaffold_4287 (33348-33176) | |
| 552-682, gnl|mm7|chr19 (17265783-17265614) | |
| 552-682, gnl|Mm7|chr19 (17265768-17265638) | |
| 552-682, gnl|monDom2|scaffold_17 (10536341-10536171) | |
| 552-682, gnl|oryCun1|scaffold_199109 (76361-76189) | |
| 552-682, gnl|panTro1|chr11 (59918707-59918879) | |
| 552-682, gnl|rheMac2|chr15 (84953302-84953474) | |
| 552-682, gnl|rn3|chr1 (221288531-221288371) | |
| 552-682, gnl|tetNig1|chr12 (7102545-7102696) | |
| 552-682, gnl|xenTro1|scaffold_1320 (54724-54884) | |
| 798-970, gnl|bosTau2|chr20 (37565761-37565933) | |
| 798-970, gnl|Hg17|chr9 (76037706-76037878) | |
| 798-970, gnl|Mm7|chr19 (17261758-17261588) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| mgp (0.230681) | |
| aor (0.195274) | |
| duo (0.172801) | |
| lin (0.145603) | |
| eru (0.120048) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.230681) | |
| aor (0.195274) | |
| duo (0.172801) | |
| lin (0.145603) | |
| eru (0.120048) | |
| jca (0.11396) | |
| eje (0.0988338) |