Non-Coding RNA Search

Ss1.1-reje34b_g7.5

Sequence:


               
               CATGCAGGCCATCTGCACCTACCTCACCCAGCTCTCAGTCCTGCGCCTGGCCTGGTGCAA
GGAGCTCCAGGACTGGGGGCTTCTGGGGCTGCAGGAACCAAGTGAGGAGACTTCGCAGGG
GCCCCAGGTGCGGGACCCTCGAAGTCATGGGGGGAGGGGCGCTCCCCGAGCTCAGCTGCC
CTCCTGAGTCTCCCTGGGAACGTTTGAAGGCAAACTCAGGAGGAACCTGAGAAGCAGGGG
CTTCCTCCCACAGCCACACCGAGAGCTGGAACATCAGGCCTCCAGCCTCAAGGATCCTTC
TCCCCAGCCACAGGGCCCCTCCCTGCTCATGCTGCAGGCCCTGCGGGAGTTGGACCTCAC
AGCCTGCAGCAAGCTGACTGATGCCAGTTTGACCAAGGTGCTCCAGTTCCCCCAGCTGAG
GCGGCTCTCCCTGAGTCTGTTGCCAGCACTCACGGACAAGGGCTTGGTCGCTGTGGCCAG
GGGCTGCCCCAGCCTGGAGCGCTTGGCACTGAGTCACTGCAGCCTCCTCAGTGACGAAGG
CTGGGCCCAGGCAGCCGGCTCCTGGCCGAGGCTGCAGCACCTCAACCTGTCCAGTTGCAG
TCAGCTCACAGCACGAACTTTGGATTCCATTGGGCAGGCGTGCAGGCAGCTCCAGATGGT
AGATGTGGCCCTGTGTCCTGGCATCAGCATAGCTTCCGTTAGGCGGTTCCAAGCCCAACT
GCCCCAGGTGACCTGCGTCCAGTCCCGCTTCGTGGGAGGGGCTGACCTGACCCTAACACT
CTGAGGACAGGTCAGTACCAGCCCTGTGGCTCAGCCTGTTACCTCCGGTGTCCCCAGCCC
TGGCCTCTTGACCTAGAGTTTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGCAGGCCATCTGCACCTACCTCACCCAGCTCTCAGTCCTGCGCCTGGCCTGGTGCAA
GGAGCTCCAGGACTGGGGGCTTCTGGGGCTGCAGGAACCAAGTGAGGAGACTTCGCAGGG
GCCCCAGGTGCGGGACCCTCGAAGTCATGGGGGGAGGGGCGCTCCCCGAGCTCAGCTGCC
CTCCTGAGTCTCCCTGGGAACGTTTGAAGGCAAACTCAGGAGGAACCTGAGAAGCAGGGG
CTTCCTCCCACAGCCACACCGAGAGCTGGAACATCAGGCCTCCAGCCTCAAGGATCCTTC
TCCCCAGCCACAGGGCCCCTCCCTGCTCATGCTGCAGGCCCTGCGGGAGTTGGACCTCAC
AGCCTGCAGCAAGCTGACTGATGCCAGTTTGACCAAGGTGCTCCAGTTCCCCCAGCTGAG
GCGGCTCTCCCTGAGTCTGTTGCCAGCACTCACGGACAAGGGCTTGGTCGCTGTGGCCAG
GGGCTGCCCCAGCCTGGAGCGCTTGGCACTGAGTCACTGCAGCCTCCTCAGTGACGAAGG
CTGGGCCCAGGCAGCCGGCTCCTGGCCGAGGCTGCAGCACCTCAACCTGTCCAGTTGCAG
TCAGCTCACAGCACGAACTTTGGATTCCATTGGGCAGGCGTGCAGGCAGCTCCAGATGGT
AGATGTGGCCCTGTGTCCTGGCATCAGCATAGCTTCCGTTAGGCGGTTCCAAGCCCAACT
GCCCCAGGTGACCTGCGTCCAGTCCCGCTTCGTGGGAGGGGCTGACCTGACCCTAACACT
CTGAGGACAGGTCAGTACCAGCCCTGTGGCTCAGCCTGTTACCTCCGGTGTCCCCAGCCC
TGGCCTCTTGACCTAGAGTTTGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17511878|gb|AAH18785.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17511878|gb|AAH18785.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               43-400, + strand, RNAz p=0.958219
               

               
               754-864, - strand, RNAz p=0.82346

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-400, + strand, RNAz p=0.958219
               

               
               754-864, - strand, RNAz p=0.82346

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-400, gnl|bosTau2|chr18 (28389925-28389529)
               

               
               3-400, gnl|Hg17|chr16 (65800107-65799713)
               

               
               3-400, gnl|Mm7|chr8 (103912444-103912057)
               


               
               606-864, gnl|bosTau2|chr18 (28389064-28388809)
               

               
               606-864, gnl|Hg17|chr16 (65799186-65798933)
               

               
               606-864, gnl|Mm7|chr8 (103911593-103911330)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-400, gnl|bosTau2|chr18 (28389925-28389529)
               

               
               3-400, gnl|Hg17|chr16 (65800107-65799713)
               

               
               3-400, gnl|Mm7|chr8 (103912444-103912057)
               


               
               606-864, gnl|bosTau2|chr18 (28389064-28388809)
               

               
               606-864, gnl|Hg17|chr16 (65799186-65798933)
               

               
               606-864, gnl|Mm7|chr8 (103911593-103911330)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	43-400, + strand, RNAz p=0.958219
	754-864, - strand, RNAz p=0.82346

	3-400, gnl\|bosTau2\|chr18 (28389925-28389529)
	3-400, gnl\|Hg17\|chr16 (65800107-65799713)
	3-400, gnl\|Mm7\|chr8 (103912444-103912057)

	606-864, gnl\|bosTau2\|chr18 (28389064-28388809)
	606-864, gnl\|Hg17\|chr16 (65799186-65798933)
	606-864, gnl\|Mm7\|chr8 (103911593-103911330)