Non-Coding RNA Search

Ss1.1-reje35b_b20.5

Sequence:


               
               CTGGCGCAGTTTTAGAGGGCGGCGTCAGGCTGGAAGTTTGCTGGCGCAGCCGTGGAGGGC
GGCGTCACTGAGCCGCGCCAGCGGAGCCGGGTACAGCCCCGCTCCTCTCGCCTGCCTTCT
CTGGGGCTTGCTTCTTCACCAGGCGTCCGTCGAGCCTTTTCCATGTCCCCGGTGGACGCA
GCCCTTCGCAACGTCCACCCCCATGGCCACTAGCCTGAGGAGGCCGTCTTTCACCGCCTG
TTCTTCCTCCCCTCCGGACGCGGACGACGAGGGTGTGCGCGGCACTTGCGGAGATGCTTC
TGTGTGCAAGCGATGTGCAGTGAGCAGTGGCTACTGGCAGGACCCTTGCATCCCGCATTT
GGTGAGACTGTCTAAAGAGAGGAAGGCCCCCAAAATTAACAGAGGATATTTTGCTTGTGT
CCACGGCGTCAGTCAGCTTATCAAGACGTTTCTATGGAAGACAGGATGCAACTGTCAAAT
TCTAAACCTTGGGGCTGGGGTGGATACCACCTTCTGGAGCTTAAAGGATGAGGATCTTCT
ATCAAGTACATCTTGGAAAGTCGATGTTTCAGGGATCGTCATGAGGAAGCTGCACAGCAT
CAAGTAAGTGCGGCTTTGGCCGGAAGCCAGAGCCCAGTGGCATCAGAACCAGCTCCTGGC
AGACGGCAGGGCTGACTGCCGGAGACCTCACTGTAGGCACTGCCTTCCTTTCCTGGCCTC
CTCCCTCTCTCCCTGGCCCTGGACCCTCACTGCAGTGTGTCCTGCAGTCTTCAAAATGAA
ATAGACCCTCTCCTGTGACCTTTCTGTCCAAGAATGTGATTTCTCTAACATTGAAACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCGCAGTTTTAGAGGGCGGCGTCAGGCTGGAAGTTTGCTGGCGCAGCCGTGGAGGGC
GGCGTCACTGAGCCGCGCCAGCGGAGCCGGGTACAGCCCCGCTCCTCTCGCCTGCCTTCT
CTGGGGCTTGCTTCTTCACCAGGCGTCCGTCGAGCCTTTTCCATGTCCCCGGTGGACGCA
GCCCTTCGCAACGTCCACCCCCATGGCCACTAGCCTGAGGAGGCCGTCTTTCACCGCCTG
TTCTTCCTCCCCTCCGGACGCGGACGACGAGGGTGTGCGCGGCACTTGCGGAGATGCTTC
TGTGTGCAAGCGATGTGCAGTGAGCAGTGGCTACTGGCAGGACCCTTGCATCCCGCATTT
GGTGAGACTGTCTAAAGAGAGGAAGGCCCCCAAAATTAACAGAGGATATTTTGCTTGTGT
CCACGGCGTCAGTCAGCTTATCAAGACGTTTCTATGGAAGACAGGATGCAACTGTCAAAT
TCTAAACCTTGGGGCTGGGGTGGATACCACCTTCTGGAGCTTAAAGGATGAGGATCTTCT
ATCAAGTACATCTTGGAAAGTCGATGTTTCAGGGATCGTCATGAGGAAGCTGCACAGCAT
CAAGTAAGTGCGGCTTTGGCCGGAAGCCAGAGCCCAGTGGCATCAGAACCAGCTCCTGGC
AGACGGCAGGGCTGACTGCCGGAGACCTCACTGTAGGCACTGCCTTCCTTTCCTGGCCTC
CTCCCTCTCTCCCTGGCCCTGGACCCTCACTGCAGTGTGTCCTGCAGTCTTCAAAATGAA
ATAGACCCTCTCCTGTGACCTTTCTGTCCAAGAATGTGATTTCTCTAACATTGAAACAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               40-315, gnl|bosTau2|chr25 (22375607-22375336)
               

               
               40-315, gnl|Hg17|chr16 (25030540-25030821)
               

               
               40-315, gnl|Mm7|chr7 (119480652-119480924)
               


               
               525-840, gnl|bosTau2|chr25 (22331032-22330733)
               

               
               525-840, gnl|Hg17|chr16 (25058991-25059325)
               

               
               525-840, gnl|Mm7|chr7 (119505499-119505772)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-315, gnl|bosTau2|chr25 (22375607-22375336)
               

               
               40-315, gnl|Hg17|chr16 (25030540-25030821)
               

               
               40-315, gnl|Mm7|chr7 (119480652-119480924)
               


               
               525-840, gnl|bosTau2|chr25 (22331032-22330733)
               

               
               525-840, gnl|Hg17|chr16 (25058991-25059325)
               

               
               525-840, gnl|Mm7|chr7 (119505499-119505772)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               nlu (0.191681)
               

               
               cov (0.132153)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cov (0.132153)
               

               
               eje (0.0988338)

	40-315, gnl\|bosTau2\|chr25 (22375607-22375336)
	40-315, gnl\|Hg17\|chr16 (25030540-25030821)
	40-315, gnl\|Mm7\|chr7 (119480652-119480924)

	525-840, gnl\|bosTau2\|chr25 (22331032-22330733)
	525-840, gnl\|Hg17\|chr16 (25058991-25059325)
	525-840, gnl\|Mm7\|chr7 (119505499-119505772)