Ss1.1-reje35b_f20.5
|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTCTTCAGCTAAAACAGCAGATAATTTATTGTACACGTGTTACATTCAGCC
ACAACTGAGAACAGAACTAGTCCAGAAAGTCACAGGTCCAGGGCAAAAAACCAAAAGGGA
CCATTTTGATATGAGCAAGGTGGGTCTCAGAGTGGTCCAGGCGATCAGAACGGCGAAAAG
TTGTTATAGATCCATTGAGACAAGTTCTAGACAGAAGGCATGCAGTCCAACAAATTGTAC
CAACGTCCCTGGCCTCTGGGATTTCGTTTCTGCTCCTGTGGCTTCCACGGTGTACAAGTT
TACTTGGACCTCTGCCTCATCTTTCTTCTTTTGCGCTTCAGCCTGCGCATTCGCTTCTTC
CTCCACTTCGCTCTCATGGCGCGGAGGTTTCTCAGAGTAAAGAAAAAAAGTCTACAGTTA
GTTCGCTGTAATGATGGCAATCGCAGAGATCAGATGTTTACGGATTGTACTCGGAACCGG
AGAGAGCCCAAACCGAGACTCACCTCAGAAGATGGC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTCTTCAGCTAAAACAGCAGATAATTTATTGTACACGTGTTACATTCAGCC
ACAACTGAGAACAGAACTAGTCCAGAAAGTCACAGGTCCAGGGCAAAAAACCAAAAGGGA
CCATTTTGATATGAGCAAGGTGGGTCTCAGAGTGGTCCAGGCGATCAGAACGGCGAAAAG
TTGTTATAGATCCATTGAGACAAGTTCTAGACAGAAGGCATGCAGTCCAACAAATTGTAC
CAACGTCCCTGGCCTCTGGGATTTCGTTTCTGCTCCTGTGGCTTCCACGGTGTACAAGTT
TACTTGGACCTCTGCCTCATCTTTCTTCTTTTGCGCTTCAGCCTGCGCATTCGCTTCTTC
CTCCACTTCGCTCTCATGGCGCGGAGGTTTCTCAGAGTAAAGAAAAAAAGTCTACAGTTA
GTTCGCTGTAATGATGGCAATCGCAGAGATCAGATGTTTACGGATTGTACTCGGAACCGG
AGAGAGCCCAAACCGAGACTCACCTCAGAAGATGGC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
49-456, gnl|bosTau2|chr23 (39051289-39051702) |
|
49-456, gnl|Hg17|chr22 (34558809-34559223) |
|
49-456, gnl|Mm7|chr2 (150668572-150668171) |
| |
|
57-455, gnl|bosTau2|chr1 (85972573-85972964) |
|
57-455, gnl|Mm7|chrX (88161387-88160986) |
| |
|
64-454, gnl|bosTau2|chr17 (22840289-22840687) |
|
64-454, gnl|canFam2|chr9 (21994538-21994115) |
|
64-454, gnl|dasNov1|scaffold_248693 (1053-622) |
|
64-454, gnl|echTel1|scaffold_209179 (1676-1261) |
|
64-454, gnl|hg17|chr2 (38904425-38904829) |
|
64-454, gnl|Hg17|chr20 (21684291-21683891) |
|
64-454, gnl|loxAfr1|scaffold_11982 (83498-83074) |
|
64-454, gnl|Mm7|chr2 (113945972-113946357) |
|
64-454, gnl|mm7|chrX (88160965-88161384) |
|
64-454, gnl|oryCun1|scaffold_81933 (6922-6511) |
|
64-454, gnl|panTro1|chr12 (40396729-40397133) |
|
64-454, gnl|rheMac2|chr13 (38751170-38751571) |
|
64-454, gnl|rn3|chr2 (232828102-232828509) |
| |
|
185-390, gnl|bosTau2|chr11 (37645019-37644809) |
|
185-390, gnl|Hg17|chr18 (5222913-5223156) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
49-456, gnl|bosTau2|chr23 (39051289-39051702) |
|
49-456, gnl|Hg17|chr22 (34558809-34559223) |
|
49-456, gnl|Mm7|chr2 (150668572-150668171) |
| |
|
57-455, gnl|bosTau2|chr1 (85972573-85972964) |
|
57-455, gnl|Mm7|chrX (88161387-88160986) |
| |
|
64-454, gnl|bosTau2|chr17 (22840289-22840687) |
|
64-454, gnl|canFam2|chr9 (21994538-21994115) |
|
64-454, gnl|dasNov1|scaffold_248693 (1053-622) |
|
64-454, gnl|echTel1|scaffold_209179 (1676-1261) |
|
64-454, gnl|hg17|chr2 (38904425-38904829) |
|
64-454, gnl|Hg17|chr20 (21684291-21683891) |
|
64-454, gnl|loxAfr1|scaffold_11982 (83498-83074) |
|
64-454, gnl|Mm7|chr2 (113945972-113946357) |
|
64-454, gnl|mm7|chrX (88160965-88161384) |
|
64-454, gnl|oryCun1|scaffold_81933 (6922-6511) |
|
64-454, gnl|panTro1|chr12 (40396729-40397133) |
|
64-454, gnl|rheMac2|chr13 (38751170-38751571) |
|
64-454, gnl|rn3|chr2 (232828102-232828509) |
| |
|
185-390, gnl|bosTau2|chr11 (37645019-37644809) |
|
185-390, gnl|Hg17|chr18 (5222913-5223156) |
|
duo (5.52964) |
|
eje (5.04052) |
|
mcp (4.94881) |
|
nca (4.51684) |
|
lnt (3.98463) |
|
elu (3.46821) |
|
nep (3.31065) |
|
pty (3.28243) |
|
ton (2.808) |
|
eru (2.7611) |
|
nco (2.74947) |
|
fty (2.63759) |
|
ese (2.53004) |
|
fcc (2.37342) |
|
nlu (2.30017) |
|
ill (2.2827) |
|
cag (2.26792) |
|
nmm (2.12483) |
|
amn (2.08855) |
|
nbm (1.98649) |
|
med (1.86003) |
|
eep (1.83846) |
|
ecc (1.72553) |
|
cut (1.69924) |
|
nje (1.6592) |
|
fli (1.62305) |
|
csp (1.61186) |
|
jca (1.59544) |
|
jej (1.58275) |
|
col (1.56006) |
|
eye (1.53453) |
|
hlv (1.53182) |
|
cli (1.52812) |
|
fhi (1.5262) |
|
nms (1.49701) |
|
mas (1.47213) |
|
cov (1.05722) |
|
cst (0.980255) |
|
cly (0.965135) |
|
hyp (0.85702) |
|
cga (0.837287) |
|
ute (0.796707) |
|
eli (0.759071) |
|
sag (0.730861) |
|
pgl (0.7109) |
|
ebs (0.709807) |
|
fbs (0.701385) |
|
rec (0.692281) |
|
ece (0.687916) |
|
clu (0.598229) |
|
csk (0.562984) |
|
fce (0.543183) |
|
cje (0.495704) |
|
ctl (0.306138) |
|
cte (0.29274) |
|
ssp (0.271039) |
|
pan (0.23596) |
|
spc (0.226732) |
|
tes (0.207814) |
|
cmu (0.186393) |
|
bfe (0.149858) |
|
che (0.136314) |
|
pla (0.133672) |
|
kid (0.129735) |
|
ova (0.129132) |
|
bla (0.124347) |
|
duo (5.52964) |
|
eje (5.04052) |
|
mcp (4.94881) |
|
nca (4.51684) |
|
lnt (3.98463) |
|
elu (3.46821) |
|
nep (3.31065) |
|
pty (3.28243) |
|
ton (2.808) |
|
eru (2.7611) |
|
nco (2.74947) |
|
fty (2.63759) |
|
ese (2.53004) |
|
fcc (2.37342) |
|
nlu (2.30017) |
|
ill (2.2827) |
|
cag (2.26792) |
|
nmm (2.12483) |
|
amn (2.08855) |
|
nbm (1.98649) |
|
med (1.86003) |
|
eep (1.83846) |
|
ecc (1.72553) |
|
cut (1.69924) |
|
nje (1.6592) |
|
fli (1.62305) |
|
csp (1.61186) |
|
jca (1.59544) |
|
jej (1.58275) |
|
col (1.56006) |
|
eye (1.53453) |
|
hlv (1.53182) |
|
cli (1.52812) |
|
fhi (1.5262) |
|
nms (1.49701) |
|
mas (1.47213) |
|
cov (1.05722) |
|
cst (0.980255) |
|
cly (0.965135) |
|
hyp (0.85702) |
|
cga (0.837287) |
|
ute (0.796707) |
|
eli (0.759071) |
|
sag (0.730861) |
|
pgl (0.7109) |
|
ebs (0.709807) |
|
fbs (0.701385) |
|
rec (0.692281) |
|
ece (0.687916) |
|
clu (0.598229) |
|
csk (0.562984) |
|
fce (0.543183) |
|
cje (0.495704) |
|
ctl (0.306138) |
|
cte (0.29274) |
|
ssp (0.271039) |
|
pan (0.23596) |
|
spc (0.226732) |
|
tes (0.207814) |
|
cmu (0.186393) |
|
bfe (0.149858) |
|
che (0.136314) |
|
pla (0.133672) |
|
kid (0.129735) |
|
ova (0.129132) |
|
bla (0.124347) |
