Ss1.1-reje35b_f22.5
|
GGGGGCGGGCCGGGGCCACATTCCTGAAGCTCGCTTTTGCGGCGCGCACCATGGCTGGAG
AGCCCACGGTCTCGCTCTCTGAACTCCGTTCGCTGCTAGCCTCAGGCCGGGCCCGGCTCA
TCGACGTGCGATCTAGGGAGGAGGCGGCCGCTGGGACCATCCCTGGGGCGCTCAACATCC
CGGTGTCAGAGTTGGAAAGTGCCCTGCAGATGGAGCCAGCTGCTTTCAAGGCTTTGTACT
CTGCCGAGAAGCCAAAGCTGGAAGAAGAGAACCTCATTTTCTTCTGTCAGATGGGCAAGA
GGGGCTTGCAGGCCACACAGTTGGCACAGGGCCTTGGATACAAAGGGGCTCGGAACTACG
AAGGGGCCTATAGAGAATGGTTCCAGAAAGAAGGCTAGGTAGAAGGTGGTTTACTGAATG
CTCCCTCCCCCTGTCCATGGCCACCTTTACTAAGAGTGATGATGGCGCTGACTTGTTGGG
TTGGGTAACTTCTTATAGTGCTGTGCACGCAAAAGCATCAAATAAAGAGCATTTAATTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGGGCGGGCCGGGGCCACATTCCTGAAGCTCGCTTTTGCGGCGCGCACCATGGCTGGAG
AGCCCACGGTCTCGCTCTCTGAACTCCGTTCGCTGCTAGCCTCAGGCCGGGCCCGGCTCA
TCGACGTGCGATCTAGGGAGGAGGCGGCCGCTGGGACCATCCCTGGGGCGCTCAACATCC
CGGTGTCAGAGTTGGAAAGTGCCCTGCAGATGGAGCCAGCTGCTTTCAAGGCTTTGTACT
CTGCCGAGAAGCCAAAGCTGGAAGAAGAGAACCTCATTTTCTTCTGTCAGATGGGCAAGA
GGGGCTTGCAGGCCACACAGTTGGCACAGGGCCTTGGATACAAAGGGGCTCGGAACTACG
AAGGGGCCTATAGAGAATGGTTCCAGAAAGAAGGCTAGGTAGAAGGTGGTTTACTGAATG
CTCCCTCCCCCTGTCCATGGCCACCTTTACTAAGAGTGATGATGGCGCTGACTTGTTGGG
TTGGGTAACTTCTTATAGTGCTGTGCACGCAAAAGCATCAAATAAAGAGCATTTAATTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|21636047|gb|AAM69840.1| |
Protein identifier
|
gi|21636047|gb|AAM69840.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
171-345, gnl|bosTau2|chr3 (7757325-7757496) |
|
171-345, gnl|canFam2|chr38 (24420747-24420593) |
|
171-345, gnl|danRer3|chr14 (29213080-29212922) |
|
171-345, gnl|dasNov1|scaffold_31369 (6075-5917) |
|
171-345, gnl|echTel1|scaffold_319439 (41131-41289) |
|
171-345, gnl|fr1|chrUn (28146192-28146348) |
|
171-345, gnl|hg17|chr1 (157820756-157820912) |
|
171-345, gnl|Hg17|chr1 (157820947-157820777) |
|
171-345, gnl|loxAfr1|scaffold_71096 (7781-7623) |
|
171-345, gnl|mm7|chr1 (171390217-171390059) |
|
171-345, gnl|Mm7|chr1 (171390023-171390192) |
|
171-345, gnl|monDom2|scaffold_0 (28840554-28840380) |
|
171-345, gnl|panTro1|chr1 (139886746-139886902) |
|
171-345, gnl|rheMac2|chr1 (139648343-139648499) |
|
171-345, gnl|rn3|chr13 (87534786-87534628) |
| |
|
346-541, gnl|bosTau2|chr3 (7757594-7757789) |
|
346-541, gnl|Hg17|chr1 (157820690-157820494) |
|
346-541, gnl|Mm7|chr1 (171390283-171390444) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
171-345, gnl|bosTau2|chr3 (7757325-7757496) |
|
171-345, gnl|canFam2|chr38 (24420747-24420593) |
|
171-345, gnl|danRer3|chr14 (29213080-29212922) |
|
171-345, gnl|dasNov1|scaffold_31369 (6075-5917) |
|
171-345, gnl|echTel1|scaffold_319439 (41131-41289) |
|
171-345, gnl|fr1|chrUn (28146192-28146348) |
|
171-345, gnl|hg17|chr1 (157820756-157820912) |
|
171-345, gnl|Hg17|chr1 (157820947-157820777) |
|
171-345, gnl|loxAfr1|scaffold_71096 (7781-7623) |
|
171-345, gnl|mm7|chr1 (171390217-171390059) |
|
171-345, gnl|Mm7|chr1 (171390023-171390192) |
|
171-345, gnl|monDom2|scaffold_0 (28840554-28840380) |
|
171-345, gnl|panTro1|chr1 (139886746-139886902) |
|
171-345, gnl|rheMac2|chr1 (139648343-139648499) |
|
171-345, gnl|rn3|chr13 (87534786-87534628) |
| |
|
346-541, gnl|bosTau2|chr3 (7757594-7757789) |
|
346-541, gnl|Hg17|chr1 (157820690-157820494) |
|
346-541, gnl|Mm7|chr1 (171390283-171390444) |
|
col (0.975039) |
|
amn (0.417711) |
|
cst (0.280073) |
|
nmm (0.265604) |
|
cmu (0.186393) |
|
duo (0.172801) |
|
cut (0.169924) |
|
cki (0.165235) |
|
cje (0.165235) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ova (0.129132) |
|
sug (0.127291) |
|
med (0.116252) |
|
ecc (0.115035) |
|
eje (0.0988338) |
|
col (0.975039) |
|
amn (0.417711) |
|
cst (0.280073) |
|
nmm (0.265604) |
|
cmu (0.186393) |
|
duo (0.172801) |
|
cut (0.169924) |
|
cki (0.165235) |
|
cje (0.165235) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ova (0.129132) |
|
sug (0.127291) |
|
med (0.116252) |
|
ecc (0.115035) |
|
eje (0.0988338) |
