Non-Coding RNA Search

Ss1.1-reje35b_k3.5

Sequence:


               
               CTCACACTCATCCTTTGCCCTTTGCCCTTGGAAAGGCGTCCCTGAAGTCCCTTCCCACCT
CTATGCCACTCTCTGCTTAGCCCAGCTCAGGGGTGTGGGGACCACATGGAAACACGGGAG
GTGAGGGCAGAAGGCAGCCCCTCCTCCAGCTGACTCGGGCCCTCGCCTGGCCTGGAGGCA
GCTGTGGGGGGCGCTGCAGCACGAGCTGAGGAGGTGGGTATGTGAGATTTGTCAGACGTG
ATTTGGTTGAAAACGGCCGGTCAGGGGACGAAAGGGGAGGAGCTCCTGCCACTGGCATTT
TGAGTGTCGGCAATTCGGGATGCCTCCTTGGGATGGTCTGGGGGCCTTTGGTGAGTCTCT
AAGTGATTTGGTCTGTTTTCAGAGTTTTCTTTGCTTTTTGTGTTTCTCTGTTGGCTTTTG
ATGTTATCAAAGCAACGAATCCTCTTTACGAGAAAATCCAAAACACACAGAAGAAGAATG
CGGGATGTCCATCCCTCTAATTGCCCCTCCGTAGCAGGGACCACTGTGAGCAGCTCAGTG
GCCCTCCCCAGCAGTGTTCTGTGGGTGGGAGCAGACCCTCAGTCCCGCCCCCACTCACGC
CTACCTTGCGGTAGGCTGTCCAGGAATGGCTCATGCCTCCCGGCCTGTTCCGTAACCCCC
CTTCTCATGCATTTCATTTGGTTCCTCCCTTTTCACGGTTAAAAAACCCAGTGCAGCTCA
GACATTATTGGCAAAAATCAACCTGAACAAACGTAGTCATCTCGCAATCCCGCCACATTC
TAAAAAACAGGCAAACGTACGTAAAGACTCATCCGAGCTTGTGAAATGGCTGCATGGTGC
ACCAGCATTTGCTACCTACAAAAAACCCAAAAACCAAAACCCAGAGTTGGAAAGGTTCCC
GCTCCTCTAAGTTGATCCAGCCTGCCCCCAACCGATTGTTTTTTGACTGAATATCTAGGA
TGACAGCAAGTGCAGCTTGAGACGGGGAAGCCCGCCAGGCCTGGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCACACTCATCCTTTGCCCTTTGCCCTTGGAAAGGCGTCCCTGAAGTCCCTTCCCACCT
CTATGCCACTCTCTGCTTAGCCCAGCTCAGGGGTGTGGGGACCACATGGAAACACGGGAG
GTGAGGGCAGAAGGCAGCCCCTCCTCCAGCTGACTCGGGCCCTCGCCTGGCCTGGAGGCA
GCTGTGGGGGGCGCTGCAGCACGAGCTGAGGAGGTGGGTATGTGAGATTTGTCAGACGTG
ATTTGGTTGAAAACGGCCGGTCAGGGGACGAAAGGGGAGGAGCTCCTGCCACTGGCATTT
TGAGTGTCGGCAATTCGGGATGCCTCCTTGGGATGGTCTGGGGGCCTTTGGTGAGTCTCT
AAGTGATTTGGTCTGTTTTCAGAGTTTTCTTTGCTTTTTGTGTTTCTCTGTTGGCTTTTG
ATGTTATCAAAGCAACGAATCCTCTTTACGAGAAAATCCAAAACACACAGAAGAAGAATG
CGGGATGTCCATCCCTCTAATTGCCCCTCCGTAGCAGGGACCACTGTGAGCAGCTCAGTG
GCCCTCCCCAGCAGTGTTCTGTGGGTGGGAGCAGACCCTCAGTCCCGCCCCCACTCACGC
CTACCTTGCGGTAGGCTGTCCAGGAATGGCTCATGCCTCCCGGCCTGTTCCGTAACCCCC
CTTCTCATGCATTTCATTTGGTTCCTCCCTTTTCACGGTTAAAAAACCCAGTGCAGCTCA
GACATTATTGGCAAAAATCAACCTGAACAAACGTAGTCATCTCGCAATCCCGCCACATTC
TAAAAAACAGGCAAACGTACGTAAAGACTCATCCGAGCTTGTGAAATGGCTGCATGGTGC
ACCAGCATTTGCTACCTACAAAAAACCCAAAAACCAAAACCCAGAGTTGGAAAGGTTCCC
GCTCCTCTAAGTTGATCCAGCCTGCCCCCAACCGATTGTTTTTTGACTGAATATCTAGGA
TGACAGCAAGTGCAGCTTGAGACGGGGAAGCCCGCCAGGCCTGGCTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               516-632, - strand, RNAz p=0.979944

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               516-632, - strand, RNAz p=0.979944

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-1005, gnl|bosTau2|chr11 (11139399-11138441)
               

               
               18-1005, gnl|Hg17|chr2 (72269800-72268883)
               

               
               18-1005, gnl|Mm7|chr6 (84602435-84601561)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-1005, gnl|bosTau2|chr11 (11139399-11138441)
               

               
               18-1005, gnl|Hg17|chr2 (72269800-72268883)
               

               
               18-1005, gnl|Mm7|chr6 (84602435-84601561)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               nep (0.183925)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nep (0.183925)
               

               
               eje (0.0988338)

	18-1005, gnl\|bosTau2\|chr11 (11139399-11138441)
	18-1005, gnl\|Hg17\|chr2 (72269800-72268883)
	18-1005, gnl\|Mm7\|chr6 (84602435-84601561)