Non-Coding RNA Search

Ss1.1-reje35b_p11.5

Sequence:


               
               AATTCCATTCTCCTGACAGCAAAGAAATTGAATCACTCTTGCCAAAGCCCACGGCCCCAC
AAGAATGCTGCAAAGCTTTGTCCTGCTGTTCCCAGACAGGCAGCTGCACCCAGACCCCCC
CACTCCCACCAAGCCTGGCCTCAGAGAGGTGGTACAGACACTCCCTGCCGCATCTAGGCC
ACGCCCCTGCCAGGCTGAGCCCCAGCCCCTCTGTATAGTGGCTCCTCCCCCTCGCTCCCC
GAGTACCATGCAGCAGAGCTTCCTGAGCCCCGACTTGCATTCTGTACAGTGGGCACGTCA
CTGCCGCTTCCTGGTGTATCAACAGTGCAGCAGCCAGGGCTAGGCAGCACCAGCTGGAAA
AAGCAGGGAAGCTCTGGGGCGCAGGGCAGGGAGTCCTGCCCCCTGGGTGGGGGCCATGGA
AGGGTGGGTTCGCAGGACCTCCAGGTGGGACTGCGGGGTGACGTGGCTGCACGCTGCTGT
TCCTCCTGCCTCTTGCAGGATGCTCAGCACCTAGTGGGTATCATGGAATGTCGGTGCCAG
TGACAGAATCCCAGGGACAGAGCACAGCTCGTGCAATGAGTCAGGGCTTGACAGTTTGGG
GGCTGTTAGAGCATGGGGAGGCATTGCAGGGAACAGCAAGAAACAGAGCCGGAACCAAGT
TGGGAGGTACGTCAGGCCAGGACTTGAACTCACAGGTGACGGGGAACCACAAAGATTTCG
ATCTGCGTGTGTGCGTGTGCAGGGGGTGTGGGGGTGTGATGAGCTGCGTGGAGAATGCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCCATTCTCCTGACAGCAAAGAAATTGAATCACTCTTGCCAAAGCCCACGGCCCCAC
AAGAATGCTGCAAAGCTTTGTCCTGCTGTTCCCAGACAGGCAGCTGCACCCAGACCCCCC
CACTCCCACCAAGCCTGGCCTCAGAGAGGTGGTACAGACACTCCCTGCCGCATCTAGGCC
ACGCCCCTGCCAGGCTGAGCCCCAGCCCCTCTGTATAGTGGCTCCTCCCCCTCGCTCCCC
GAGTACCATGCAGCAGAGCTTCCTGAGCCCCGACTTGCATTCTGTACAGTGGGCACGTCA
CTGCCGCTTCCTGGTGTATCAACAGTGCAGCAGCCAGGGCTAGGCAGCACCAGCTGGAAA
AAGCAGGGAAGCTCTGGGGCGCAGGGCAGGGAGTCCTGCCCCCTGGGTGGGGGCCATGGA
AGGGTGGGTTCGCAGGACCTCCAGGTGGGACTGCGGGGTGACGTGGCTGCACGCTGCTGT
TCCTCCTGCCTCTTGCAGGATGCTCAGCACCTAGTGGGTATCATGGAATGTCGGTGCCAG
TGACAGAATCCCAGGGACAGAGCACAGCTCGTGCAATGAGTCAGGGCTTGACAGTTTGGG
GGCTGTTAGAGCATGGGGAGGCATTGCAGGGAACAGCAAGAAACAGAGCCGGAACCAAGT
TGGGAGGTACGTCAGGCCAGGACTTGAACTCACAGGTGACGGGGAACCACAAAGATTTCG
ATCTGCGTGTGTGCGTGTGCAGGGGGTGTGGGGGTGTGATGAGCTGCGTGGAGAATGCGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-118, - strand, RNAz p=0.862517
               

               
               355-462, - strand, RNAz p=0.986879

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.862517
               

               
               355-462, - strand, RNAz p=0.986879

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               107-259, - strand, RNAmicro p=0.957875

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               107-259, - strand, RNAmicro p=0.957875

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-690, gnl|bosTau2|chr25 (39080081-39079404)
               

               
               1-690, gnl|Hg17|chr7 (2330119-2330719)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-690, gnl|bosTau2|chr25 (39080081-39079404)
               

               
               1-690, gnl|Hg17|chr7 (2330119-2330719)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               eje (0.0988338)

	1-118, - strand, RNAz p=0.862517
	355-462, - strand, RNAz p=0.986879

	1-690, gnl\|bosTau2\|chr25 (39080081-39079404)
	1-690, gnl\|Hg17\|chr7 (2330119-2330719)