Non-Coding RNA Search

Ss1.1-reje35b_p3.5

Sequence:


               
               CACTTGCCTGTCTGGTGACAAAACTGTCCTGACAATCACCTGGGACCTGCATGTCTTAGC
AAGTGGCCTTTCCTGTGGCCACCATTCTGGGCACCCAGAACAGGTGCCAGCCAGCCGGGG
GCTCCCAACACTCCACTTGTGGCCTGAGCCCCCCACATCCCAGCCCATCCACCAGCAACC
CACCCCCCACCCAGAGCAGCACGAGGCCCAGGCCCTGAGGCCCAGCCCGAAAACACACAC
AGCAACCCAGGCAGTGGCCCAAGAGGTTCTGGGTGCTTCTTGGCCTCTCTGGCCCCTTGA
GCCCTCTTGCCATGTTCCACACTGCCTTCTCGTGCCCTGCTGTGCTTCCCTAAGACCCAC
GTTCAAGATGCGCCCTTGGGATTCAGTCTCCAGGGAAGCCCCTGCCGGGTGGCGTCAACC
ACGTGGTTCTGTCCTCAGGTGTCCGTCCCCATCCAGGACACTGTTCCAGCCCCGTCCAGG
AAGTGCCACAGCCCTGGATTCCCTTGCTTGGGCCAGGAGTCAAGAACCACCTGGCTTCCG
AGGACCCCACCCCAAAGAGGTGGGCCTCCCAGCTGCCCTTTTCCCCTGGGTGCTGTGCCG
GCCGGAGGACGTAGGGCCCCTGACATGGCCTCGCATGCGATTTTCCCGCGGTGCCGTGGA
CCCCTGAGACGCGGACCCTGGCATATCTGAAATGGCCGTGACCCCCCCCGCCCCTTAGAA
AGACTGAGCCTTGTCTGACTGACTCCTCCCACTTTGGATGATACTGGGGGGGCGGGGGCC
GGGGGGGGAGGGGCTGGCCCAGGCATCAGCATTTCCCCAGCTCCTGTTGTATTCTAACGG
TAAATCATTTGGCAAAGAGTGTATTTTAATAACTGCTGCCTAACTTTTCTCTCTGTTCTG
TTGGCGAGGTTCCTATCTGGATAAAGTTGTCTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTTGCCTGTCTGGTGACAAAACTGTCCTGACAATCACCTGGGACCTGCATGTCTTAGC
AAGTGGCCTTTCCTGTGGCCACCATTCTGGGCACCCAGAACAGGTGCCAGCCAGCCGGGG
GCTCCCAACACTCCACTTGTGGCCTGAGCCCCCCACATCCCAGCCCATCCACCAGCAACC
CACCCCCCACCCAGAGCAGCACGAGGCCCAGGCCCTGAGGCCCAGCCCGAAAACACACAC
AGCAACCCAGGCAGTGGCCCAAGAGGTTCTGGGTGCTTCTTGGCCTCTCTGGCCCCTTGA
GCCCTCTTGCCATGTTCCACACTGCCTTCTCGTGCCCTGCTGTGCTTCCCTAAGACCCAC
GTTCAAGATGCGCCCTTGGGATTCAGTCTCCAGGGAAGCCCCTGCCGGGTGGCGTCAACC
ACGTGGTTCTGTCCTCAGGTGTCCGTCCCCATCCAGGACACTGTTCCAGCCCCGTCCAGG
AAGTGCCACAGCCCTGGATTCCCTTGCTTGGGCCAGGAGTCAAGAACCACCTGGCTTCCG
AGGACCCCACCCCAAAGAGGTGGGCCTCCCAGCTGCCCTTTTCCCCTGGGTGCTGTGCCG
GCCGGAGGACGTAGGGCCCCTGACATGGCCTCGCATGCGATTTTCCCGCGGTGCCGTGGA
CCCCTGAGACGCGGACCCTGGCATATCTGAAATGGCCGTGACCCCCCCCGCCCCTTAGAA
AGACTGAGCCTTGTCTGACTGACTCCTCCCACTTTGGATGATACTGGGGGGGCGGGGGCC
GGGGGGGGAGGGGCTGGCCCAGGCATCAGCATTTCCCCAGCTCCTGTTGTATTCTAACGG
TAAATCATTTGGCAAAGAGTGTATTTTAATAACTGCTGCCTAACTTTTCTCTCTGTTCTG
TTGGCGAGGTTCCTATCTGGATAAAGTTGTCTTTTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-177, - strand, RNAz p=0.919342
               

               
               489-585, - strand, RNAz p=0.530923

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-177, - strand, RNAz p=0.919342
               

               
               489-585, - strand, RNAz p=0.530923

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               1-788, gnl|bosTau2|chr4 (39149773-39150589)
               

               
               1-788, gnl|canFam2|chrUn (33578769-33578220)
               

               
               1-788, gnl|dasNov1|scaffold_161548 (3134-2343)
               

               
               1-788, gnl|echTel1|scaffold_184067 (4082-4798)
               

               
               1-788, gnl|hg17|chr7 (44026047-44026788)
               

               
               1-788, gnl|Hg17|chr7 (44026060-44026887)
               

               
               1-788, gnl|loxAfr1|scaffold_14435 (12067-11323)
               

               
               1-788, gnl|mm7|chr11 (5918876-5919484)
               

               
               1-788, gnl|panTro1|chr6_random (30926731-30925990)
               

               
               1-788, gnl|rheMac2|chr3 (82123307-82122567)
               

               
               1-788, gnl|rn3|chr14 (86649111-86649714)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-788, gnl|bosTau2|chr4 (39149773-39150589)
               

               
               1-788, gnl|canFam2|chrUn (33578769-33578220)
               

               
               1-788, gnl|dasNov1|scaffold_161548 (3134-2343)
               

               
               1-788, gnl|echTel1|scaffold_184067 (4082-4798)
               

               
               1-788, gnl|hg17|chr7 (44026047-44026788)
               

               
               1-788, gnl|Hg17|chr7 (44026060-44026887)
               

               
               1-788, gnl|loxAfr1|scaffold_14435 (12067-11323)
               

               
               1-788, gnl|mm7|chr11 (5918876-5919484)
               

               
               1-788, gnl|panTro1|chr6_random (30926731-30925990)
               

               
               1-788, gnl|rheMac2|chr3 (82123307-82122567)
               

               
               1-788, gnl|rn3|chr14 (86649111-86649714)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-177, - strand, RNAz p=0.919342
	489-585, - strand, RNAz p=0.530923

	1-788, gnl\|bosTau2\|chr4 (39149773-39150589)
	1-788, gnl\|canFam2\|chrUn (33578769-33578220)
	1-788, gnl\|dasNov1\|scaffold_161548 (3134-2343)
	1-788, gnl\|echTel1\|scaffold_184067 (4082-4798)
	1-788, gnl\|hg17\|chr7 (44026047-44026788)
	1-788, gnl\|Hg17\|chr7 (44026060-44026887)
	1-788, gnl\|loxAfr1\|scaffold_14435 (12067-11323)
	1-788, gnl\|mm7\|chr11 (5918876-5919484)
	1-788, gnl\|panTro1\|chr6_random (30926731-30925990)
	1-788, gnl\|rheMac2\|chr3 (82123307-82122567)
	1-788, gnl\|rn3\|chr14 (86649111-86649714)

	nlu (0.191681)
	mcp (0.170648)
	nmm (0.132802)
	jca (0.11396)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)