Non-Coding RNA Search

Ss1.1-reje36b_c12.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTGTTAAGAAATACTTTAATGTCTCAAAAATCAGTTTCAGTGCT
GGCACCACAGGGTCACCTCCCTGCAGCTGGCCCTCCTCTGGGAACATGGGGCAGTCCTGG
GCACTCCAGGCTGGGGCAGGAGGGGGACTGCATGAGGTCATTCCTGCTCTCAGGGCCACT
TTCTATCACATGTCCAGGGCACAGCTGTCTTGTGGGTGCACTGGGGGGCGGCTGGGAGCT
GGGGAGGGCACGGCCAGGCCGGGCTCCTCCTGGGACACAGCCTGGGGTCAGGGCTGCTCC
TGTGCTGGCCTGGGGAGGCTCCTCTGGAGGCCATGTGACCTTCCTCCTTGGAAGTGTCCA
GAGCCCATGCCACAGCCCTTGGGACCTTGGGGAGACGAGGGACCTTCCAGGCCCCCTGGG
CAAGCCCCCTGCACTCCTTGGAGATGGGCACGGCCACTTGCAGGAGTGTGGACTAGAGCT
GCACCAATGCAGCCTGGCTGGAGAGGCGCTTGGCAGACCCGGCTACACGTCCGTCTCCAC
CCGCAGCCGCTCCATCCTGCGCACGTTGCCCTCCACGGCCACGCGGCTGGTGATACTCTG
GGCAAAGTCCTCGGGGAACCAGCCCGTCTCTCCATCCCGCAGCCTCTCACCATAGAACCA
ACCATCCTCCTGCTGCAGGATCAGGACCACGTCTGCCTGCTGCAGCGTGATCTCGTCCAC
CTGCTTGGCCAAGTAGGCCTTGGTGACCTCCACCTGGAGCAGGTCTCCTTTGTTGCTGGG
GCCCTGCCCCTGCCTCTCCCGGTACGTAAGTGCCGTGATCCACCGCGCCCGGTCACTCGC
GGAGTCCGAGGACAGCAGGATCTTTTCCTGGCGGCCCTCGCTGTTGTGCAGCAGCGTCAG
CTGGAAGGGGTGTGGCACAGAGGAGCTGCGGCTGCCGCCCCCCGGCAGAGAGGCCTCCGA
GGGCTCCATCTTCTGCACCTGGATGTGGTCCATCTGGGCATAGTCCTGGACCACAAAGCT
GTCCTCGCTCTTCTTCTTGGTGATCACGAGGACATCATTGAACAGGAACAGGTAGCAGGT
CGGCCGGCTGGCGAGTTTTCGGAAAAGCCCGGTTTCTTCCACCACGAAGAGCTCCCCACG
CTTCAGCAGCCAGCGGGAGGCTGAGATCAGAGGGAGGGACTTGACCTTGCTGAAATCCAG
CTGTGTGTGTAGCGTGTACATCTGCTCCGTACGCTCCATCTTGTGGGCCCCCTCGTTGCA
CTGCTTCACCAGCTTGCTGATGGCCTTGAAGGCGCGGCTGGCGGCCTTGTACCTCTCGGG
GTGGCCCTGGGTCTTGAGGCAGAGCGTGTCCGCCAGGAGTGGCAGCCGGGTCACCCTCTG
CATGGGGAGGATCAGGAAGGAGATCATGGGGAGGCCGCCGCACGCGGGCCGCTGCTCTAT
CTCCCGCAGGGCCTCTCGGAAGGCAGCGTTGCTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTGTTAAGAAATACTTTAATGTCTCAAAAATCAGTTTCAGTGCT
GGCACCACAGGGTCACCTCCCTGCAGCTGGCCCTCCTCTGGGAACATGGGGCAGTCCTGG
GCACTCCAGGCTGGGGCAGGAGGGGGACTGCATGAGGTCATTCCTGCTCTCAGGGCCACT
TTCTATCACATGTCCAGGGCACAGCTGTCTTGTGGGTGCACTGGGGGGCGGCTGGGAGCT
GGGGAGGGCACGGCCAGGCCGGGCTCCTCCTGGGACACAGCCTGGGGTCAGGGCTGCTCC
TGTGCTGGCCTGGGGAGGCTCCTCTGGAGGCCATGTGACCTTCCTCCTTGGAAGTGTCCA
GAGCCCATGCCACAGCCCTTGGGACCTTGGGGAGACGAGGGACCTTCCAGGCCCCCTGGG
CAAGCCCCCTGCACTCCTTGGAGATGGGCACGGCCACTTGCAGGAGTGTGGACTAGAGCT
GCACCAATGCAGCCTGGCTGGAGAGGCGCTTGGCAGACCCGGCTACACGTCCGTCTCCAC
CCGCAGCCGCTCCATCCTGCGCACGTTGCCCTCCACGGCCACGCGGCTGGTGATACTCTG
GGCAAAGTCCTCGGGGAACCAGCCCGTCTCTCCATCCCGCAGCCTCTCACCATAGAACCA
ACCATCCTCCTGCTGCAGGATCAGGACCACGTCTGCCTGCTGCAGCGTGATCTCGTCCAC
CTGCTTGGCCAAGTAGGCCTTGGTGACCTCCACCTGGAGCAGGTCTCCTTTGTTGCTGGG
GCCCTGCCCCTGCCTCTCCCGGTACGTAAGTGCCGTGATCCACCGCGCCCGGTCACTCGC
GGAGTCCGAGGACAGCAGGATCTTTTCCTGGCGGCCCTCGCTGTTGTGCAGCAGCGTCAG
CTGGAAGGGGTGTGGCACAGAGGAGCTGCGGCTGCCGCCCCCCGGCAGAGAGGCCTCCGA
GGGCTCCATCTTCTGCACCTGGATGTGGTCCATCTGGGCATAGTCCTGGACCACAAAGCT
GTCCTCGCTCTTCTTCTTGGTGATCACGAGGACATCATTGAACAGGAACAGGTAGCAGGT
CGGCCGGCTGGCGAGTTTTCGGAAAAGCCCGGTTTCTTCCACCACGAAGAGCTCCCCACG
CTTCAGCAGCCAGCGGGAGGCTGAGATCAGAGGGAGGGACTTGACCTTGCTGAAATCCAG
CTGTGTGTGTAGCGTGTACATCTGCTCCGTACGCTCCATCTTGTGGGCCCCCTCGTTGCA
CTGCTTCACCAGCTTGCTGATGGCCTTGAAGGCGCGGCTGGCGGCCTTGTACCTCTCGGG
GTGGCCCTGGGTCTTGAGGCAGAGCGTGTCCGCCAGGAGTGGCAGCCGGGTCACCCTCTG
CATGGGGAGGATCAGGAAGGAGATCATGGGGAGGCCGCCGCACGCGGGCCGCTGCTCTAT
CTCCCGCAGGGCCTCTCGGAAGGCAGCGTTGCTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|30353993|gb|AAH51838.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30353993|gb|AAH51838.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               272-368, - strand, RNAz p=0.665996

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-368, - strand, RNAz p=0.665996

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014448, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014448, -

Aligned organism(s): 23 entry(ies)

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Aligned organism(s): 23 entry(ies)

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               18-663, gnl|bosTau2|chr16 (35665347-35666042)
               

               
               18-663, gnl|Hg17|chr1 (3420834-3420168)
               

               
               18-663, gnl|Mm7|chr4 (153268071-153268638)
               


               
               829-1029, gnl|bosTau2|chr16 (35668484-35668684)
               

               
               829-1029, gnl|Hg17|chr1 (3418350-3418143)
               

               
               829-1029, gnl|Mm7|chr4 (153270363-153270563)
               


               
               1348-1474, gnl|bosTau2|chr16 (35672259-35672385)
               

               
               1348-1474, gnl|canFam2|chr5 (61047425-61047571)
               

               
               1348-1474, gnl|danRer3|chr8 (40481544-40481690)
               

               
               1348-1474, gnl|dasNov1|scaffold_190086 (3154-3000)
               

               
               1348-1474, gnl|fr1|chrUn (70535782-70535933)
               

               
               1348-1474, gnl|galGal2|chr21 (934192-934039)
               

               
               1348-1474, gnl|hg17|chr1 (3413098-3413263)
               

               
               1348-1474, gnl|Hg17|chr1 (3413243-3413117)
               

               
               1348-1474, gnl|loxAfr1|scaffold_9289 (59496-59658)
               

               
               1348-1474, gnl|mm7|chr4 (153272203-153272048)
               

               
               1348-1474, gnl|Mm7|chr4 (153272058-153272184)
               

               
               1348-1474, gnl|monDom2|scaffold_263 (4893-5039)
               

               
               1348-1474, gnl|oryCun1|scaffold_213761 (81642-81793)
               

               
               1348-1474, gnl|panTro1|chr1 (3259616-3259781)
               

               
               1348-1474, gnl|rheMac2|chr1 (6434082-6434253)
               

               
               1348-1474, gnl|rn3|chr2 (152023783-152023934)
               

               
               1348-1474, gnl|tetNig1|chr9 (1284647-1284504)

Aligned organism(s): 23 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-663, gnl|bosTau2|chr16 (35665347-35666042)
               

               
               18-663, gnl|Hg17|chr1 (3420834-3420168)
               

               
               18-663, gnl|Mm7|chr4 (153268071-153268638)
               


               
               829-1029, gnl|bosTau2|chr16 (35668484-35668684)
               

               
               829-1029, gnl|Hg17|chr1 (3418350-3418143)
               

               
               829-1029, gnl|Mm7|chr4 (153270363-153270563)
               


               
               1348-1474, gnl|bosTau2|chr16 (35672259-35672385)
               

               
               1348-1474, gnl|canFam2|chr5 (61047425-61047571)
               

               
               1348-1474, gnl|danRer3|chr8 (40481544-40481690)
               

               
               1348-1474, gnl|dasNov1|scaffold_190086 (3154-3000)
               

               
               1348-1474, gnl|fr1|chrUn (70535782-70535933)
               

               
               1348-1474, gnl|galGal2|chr21 (934192-934039)
               

               
               1348-1474, gnl|hg17|chr1 (3413098-3413263)
               

               
               1348-1474, gnl|Hg17|chr1 (3413243-3413117)
               

               
               1348-1474, gnl|loxAfr1|scaffold_9289 (59496-59658)
               

               
               1348-1474, gnl|mm7|chr4 (153272203-153272048)
               

               
               1348-1474, gnl|Mm7|chr4 (153272058-153272184)
               

               
               1348-1474, gnl|monDom2|scaffold_263 (4893-5039)
               

               
               1348-1474, gnl|oryCun1|scaffold_213761 (81642-81793)
               

               
               1348-1474, gnl|panTro1|chr1 (3259616-3259781)
               

               
               1348-1474, gnl|rheMac2|chr1 (6434082-6434253)
               

               
               1348-1474, gnl|rn3|chr2 (152023783-152023934)
               

               
               1348-1474, gnl|tetNig1|chr9 (1284647-1284504)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               col (0.585023)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.585023)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	18-663, gnl\|bosTau2\|chr16 (35665347-35666042)
	18-663, gnl\|Hg17\|chr1 (3420834-3420168)
	18-663, gnl\|Mm7\|chr4 (153268071-153268638)

	829-1029, gnl\|bosTau2\|chr16 (35668484-35668684)
	829-1029, gnl\|Hg17\|chr1 (3418350-3418143)
	829-1029, gnl\|Mm7\|chr4 (153270363-153270563)

	1348-1474, gnl\|bosTau2\|chr16 (35672259-35672385)
	1348-1474, gnl\|canFam2\|chr5 (61047425-61047571)
	1348-1474, gnl\|danRer3\|chr8 (40481544-40481690)
	1348-1474, gnl\|dasNov1\|scaffold_190086 (3154-3000)
	1348-1474, gnl\|fr1\|chrUn (70535782-70535933)
	1348-1474, gnl\|galGal2\|chr21 (934192-934039)
	1348-1474, gnl\|hg17\|chr1 (3413098-3413263)
	1348-1474, gnl\|Hg17\|chr1 (3413243-3413117)
	1348-1474, gnl\|loxAfr1\|scaffold_9289 (59496-59658)
	1348-1474, gnl\|mm7\|chr4 (153272203-153272048)
	1348-1474, gnl\|Mm7\|chr4 (153272058-153272184)
	1348-1474, gnl\|monDom2\|scaffold_263 (4893-5039)
	1348-1474, gnl\|oryCun1\|scaffold_213761 (81642-81793)
	1348-1474, gnl\|panTro1\|chr1 (3259616-3259781)
	1348-1474, gnl\|rheMac2\|chr1 (6434082-6434253)
	1348-1474, gnl\|rn3\|chr2 (152023783-152023934)
	1348-1474, gnl\|tetNig1\|chr9 (1284647-1284504)

	col (0.585023)
	nlu (0.191681)
	ill (0.175593)
	nje (0.16592)
	cki (0.165235)
	eep (0.122564)
	pgl (0.118483)
	jej (0.0989218)
	eje (0.0988338)