Non-Coding RNA Search

Ss1.1-reje36b_f24.5

Sequence:


               
               CCTTTTTATAAAACTGAAGCTATAGCTTTCAGGCTAAAATTTTAACGTAGCTACTATTTT
TATAAAATAATTTTTCAGGTTATTTGAATTGCTTTTTATTGTCCATGATAATGAAATGTT
ATGTTCTATGCGTCATTCACTCTCAAACATAGTTCACGCCTGTAGCTCTCTTCCCTCTGT
TTCTCACCCTCCTCAGACTCACTTCTCAGTTGCTCCAGGTAAATGAGACTTTTTTGACTT
GCAGTCTTCTTTCTTGCACCATATTCAAGGGAGATTACTGAAAAACACAATCACTGGTTT
TTCTTGAATCACTTAGGAACTAACTTGAGCACTTGCCATCCATGTCACCTGCGTCCTTTT
TTGGAGTCCCTTTGAGGCAGGGGTGGGGCTGGTGGGCCTGTCTCCTGGCGGTGCTTGTGG
CCGGGCTCGGGCTCGGAGCCCACCCCCTGCGGCATGGAGAAGCCTCAGGGAGAGGCCTGC
CCTCCAGCACCAACTCTGGGAGTCTCCTAGGTCCCGCTGATGCATCTTCATTCTTACCCA
TCTCTATGTCTTTCTGAAGCTTCTAGCAGCCAGGGCTTTTGCTGCTGGATGATGTCTCTC
TCAGAAGCATCTTGTCTGTGAACTTTAAAAGAGGGGTCACATCCTCACCAAGAATGCGTT
AAGCATGTGCTTTGCAGGTGCTTCTTCTATACTTACAGTGTATTTCTTGAGCTATGTCTG
CACTCCAGGCCCTATTTTGTGTGTTTATCTGCCCTTTCATCTCATTTTAAAAAGCTGTGT
TTTCACGGGGATGGTGCCTCTGAATCGCCTCCATGCTCCCCCTTTGCTCCTTGATGGATC
AAGTTGGGAAGCTGAGCACACTCATCATCCAGTTGGCTGGAGGTTTTCTCTTTGCCTGGA
GAAGCAAGGCGTTTGGAATGTATTTTTTTTTTTTTTTTGGAATGTTTGCACTATTTAGAG
TCCTAAGCCCCTCATGTTCAGCTGTGCTATGTGTCTACTGACCAAGCAGGAGAGCGGGCA
GCACCTCTGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTTTATAAAACTGAAGCTATAGCTTTCAGGCTAAAATTTTAACGTAGCTACTATTTT
TATAAAATAATTTTTCAGGTTATTTGAATTGCTTTTTATTGTCCATGATAATGAAATGTT
ATGTTCTATGCGTCATTCACTCTCAAACATAGTTCACGCCTGTAGCTCTCTTCCCTCTGT
TTCTCACCCTCCTCAGACTCACTTCTCAGTTGCTCCAGGTAAATGAGACTTTTTTGACTT
GCAGTCTTCTTTCTTGCACCATATTCAAGGGAGATTACTGAAAAACACAATCACTGGTTT
TTCTTGAATCACTTAGGAACTAACTTGAGCACTTGCCATCCATGTCACCTGCGTCCTTTT
TTGGAGTCCCTTTGAGGCAGGGGTGGGGCTGGTGGGCCTGTCTCCTGGCGGTGCTTGTGG
CCGGGCTCGGGCTCGGAGCCCACCCCCTGCGGCATGGAGAAGCCTCAGGGAGAGGCCTGC
CCTCCAGCACCAACTCTGGGAGTCTCCTAGGTCCCGCTGATGCATCTTCATTCTTACCCA
TCTCTATGTCTTTCTGAAGCTTCTAGCAGCCAGGGCTTTTGCTGCTGGATGATGTCTCTC
TCAGAAGCATCTTGTCTGTGAACTTTAAAAGAGGGGTCACATCCTCACCAAGAATGCGTT
AAGCATGTGCTTTGCAGGTGCTTCTTCTATACTTACAGTGTATTTCTTGAGCTATGTCTG
CACTCCAGGCCCTATTTTGTGTGTTTATCTGCCCTTTCATCTCATTTTAAAAAGCTGTGT
TTTCACGGGGATGGTGCCTCTGAATCGCCTCCATGCTCCCCCTTTGCTCCTTGATGGATC
AAGTTGGGAAGCTGAGCACACTCATCATCCAGTTGGCTGGAGGTTTTCTCTTTGCCTGGA
GAAGCAAGGCGTTTGGAATGTATTTTTTTTTTTTTTTTGGAATGTTTGCACTATTTAGAG
TCCTAAGCCCCTCATGTTCAGCTGTGCTATGTGTCTACTGACCAAGCAGGAGAGCGGGCA
GCACCTCTGACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               809-917, - strand, RNAz p=0.914436

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               809-917, - strand, RNAz p=0.914436

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1032, gnl|bosTau2|chr7 (34114411-34113382)
               

               
               1-1032, gnl|Hg17|chr5 (136982722-136981672)
               

               
               1-1032, gnl|Mm7|chr13 (57094225-57093118)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1032, gnl|bosTau2|chr7 (34114411-34113382)
               

               
               1-1032, gnl|Hg17|chr5 (136982722-136981672)
               

               
               1-1032, gnl|Mm7|chr13 (57094225-57093118)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hlv (0.139256)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               eje (0.0988338)

	1-1032, gnl\|bosTau2\|chr7 (34114411-34113382)
	1-1032, gnl\|Hg17\|chr5 (136982722-136981672)
	1-1032, gnl\|Mm7\|chr13 (57094225-57093118)