Ss1.1-reje37b_e10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCGTCCCGGGGCACCTCCTGAAGAACAAGGACGCGGGGGAGCAGAGATGGTTCGAGCCG CGCTGTCGCCGCCGTTCCTCCTGCCGCTGCTGCTGCTCTCCTGGGCGCCCCGAAGCCAGG CAGCCGCCGACAAGGACGAGATCCAGTGCCTGCCCGGACTGGCCAAACAGCCGTCTTTCC GCCAGTACTCTGGCTACCTCCGAGGCTCCGGCTCCAAGCACCTGCACTACTGGTTTGTGG AGTCCCAGAAGGATCCCAAGAGCAGCCCTGTGGTGCTTTGGCTCAACGGAGGGCCAGGCT GTAGCTCCCTGGACGGGCTCCTTACTGAGCACGGCCCCTTCCTGGTCCAGCCCGATGGTG CCACCCTGGAGTACAACCCCTATTCTTGGAACCTGATTGCCAATGTGTTGTACCTCGAGT CCCCAGCTGGGGTGGGCTTTTCGTACTCCGATGACAAGTCTTATGCGACCAATGACACGG AAGTCGCCCAGAGCAATTATGAAGCCCTTAAAGATTTCTTCCGCCTTTTCCCGGAGTACA AGGACAATGAGCTTTTCCTGACCGGAGAGAGCTACGCCGGCATCTACATCCCCACTCTGG CCGTGTTGGTCATGCAGGACCCCAGCATGAACCTGCAGGGGCTGGCTGTGGGCAATGGAC TCTCCTCCTATGAGCAGAACGACAACTCCCTGGTCTATTTCGCATACTACCACGGCCTTC TGGGGAACAGGCTCTGGTCTTCCCTCCAGACCCACTGCTGTTCTCAAAACAAGTGTAACT TCTACGACAACAAAGACCCAGACTGCGTGACCAGTCTTCAGGAAGTGTCCCACATTGTAA GCAGCTCTGGCCTCAACATCTACAACCTCTACGCCCCGTGTGCTGGAGGGGTGCCCAGCC ATTTAAAGTATGAGAAGGACACCATCGTGGTCCCAGATCTGGGCAACATCTTCACTCGCT TGCCACTCAAGCGGATCTGGCATCAGACACTGCTGCGTTCTGAGGGGAGGGCGAACCTGG ACCCCCCCTGCACGAACACAACAGCCGCCTCCACCTACCTCAACAACCCGTATGTCCGGA AGGCCCTCCACATCCCCGAGCAGCTGCCCCAATGGGACATGTGCAACTTCCTGGTGAATA TCCAGTATCGCCGTCTCTACCAAAGCATGTACAGCCAGTACCTGAAGCTGCTCACCCCGC AGAAATACCGGATCCTGCTGTACAATGGCGATGTGGACATGGCCTGCAATTTCATGGGAG ATGAGTGGTTTGTGGATTCCCTCAACCAGAAGATGGAGGTGCAGCGCCGGCCCTGGTTGG TGGACTACGGGGACAGCGGGGAGCAGATCGCTGGCTTCGTGAAGGAGTTTTCCCACATCG CCTTCCTTACCATCAAGGGCGCCGGACACATGGTCCCCACCGACAAGCCCCAGGCTGCCC TCACCATGTTCTCCCGCTTCCTGAATAAGCAGCCGTACTGAGGACCACGGGGACCAGCCC CCCCTCCGCCCCCACCGCCCGATCCAGCCCTTCCCAGCCTCTCCTGCTAGAAAGGAGATC CTCACTGATGCAAAATGCCCCTGTGGGGCAGGTCCCTGCCTCCACAACTACCCCCACCTG CCCCTCCCCACCTCCACAGCCCTGTGCATCCCAGACCTGGCCCCCCAGCGCCCCACTTAG ACAGCCTGGGGGGGAGTTTGCACTTTATTCCCGGCTGGGGTGGGGCCCAGCCCCTCCCTG CTTAAAGAATGCTCTTCGTGCACTGATCGCATCCCAGGAACACAGCAGAGCTCAGGACAG CCCATGGGAGGCCGGACGGACTGTAATTGATGGCTTGACAGTGATTATGGAATAAAATTG GGTACAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCGTCCCGGGGCACCTCCTGAAGAACAAGGACGCGGGGGAGCAGAGATGGTTCGAGCCG CGCTGTCGCCGCCGTTCCTCCTGCCGCTGCTGCTGCTCTCCTGGGCGCCCCGAAGCCAGG CAGCCGCCGACAAGGACGAGATCCAGTGCCTGCCCGGACTGGCCAAACAGCCGTCTTTCC GCCAGTACTCTGGCTACCTCCGAGGCTCCGGCTCCAAGCACCTGCACTACTGGTTTGTGG AGTCCCAGAAGGATCCCAAGAGCAGCCCTGTGGTGCTTTGGCTCAACGGAGGGCCAGGCT GTAGCTCCCTGGACGGGCTCCTTACTGAGCACGGCCCCTTCCTGGTCCAGCCCGATGGTG CCACCCTGGAGTACAACCCCTATTCTTGGAACCTGATTGCCAATGTGTTGTACCTCGAGT CCCCAGCTGGGGTGGGCTTTTCGTACTCCGATGACAAGTCTTATGCGACCAATGACACGG AAGTCGCCCAGAGCAATTATGAAGCCCTTAAAGATTTCTTCCGCCTTTTCCCGGAGTACA AGGACAATGAGCTTTTCCTGACCGGAGAGAGCTACGCCGGCATCTACATCCCCACTCTGG CCGTGTTGGTCATGCAGGACCCCAGCATGAACCTGCAGGGGCTGGCTGTGGGCAATGGAC TCTCCTCCTATGAGCAGAACGACAACTCCCTGGTCTATTTCGCATACTACCACGGCCTTC TGGGGAACAGGCTCTGGTCTTCCCTCCAGACCCACTGCTGTTCTCAAAACAAGTGTAACT TCTACGACAACAAAGACCCAGACTGCGTGACCAGTCTTCAGGAAGTGTCCCACATTGTAA GCAGCTCTGGCCTCAACATCTACAACCTCTACGCCCCGTGTGCTGGAGGGGTGCCCAGCC ATTTAAAGTATGAGAAGGACACCATCGTGGTCCCAGATCTGGGCAACATCTTCACTCGCT TGCCACTCAAGCGGATCTGGCATCAGACACTGCTGCGTTCTGAGGGGAGGGCGAACCTGG ACCCCCCCTGCACGAACACAACAGCCGCCTCCACCTACCTCAACAACCCGTATGTCCGGA AGGCCCTCCACATCCCCGAGCAGCTGCCCCAATGGGACATGTGCAACTTCCTGGTGAATA TCCAGTATCGCCGTCTCTACCAAAGCATGTACAGCCAGTACCTGAAGCTGCTCACCCCGC AGAAATACCGGATCCTGCTGTACAATGGCGATGTGGACATGGCCTGCAATTTCATGGGAG ATGAGTGGTTTGTGGATTCCCTCAACCAGAAGATGGAGGTGCAGCGCCGGCCCTGGTTGG TGGACTACGGGGACAGCGGGGAGCAGATCGCTGGCTTCGTGAAGGAGTTTTCCCACATCG CCTTCCTTACCATCAAGGGCGCCGGACACATGGTCCCCACCGACAAGCCCCAGGCTGCCC TCACCATGTTCTCCCGCTTCCTGAATAAGCAGCCGTACTGAGGACCACGGGGACCAGCCC CCCCTCCGCCCCCACCGCCCGATCCAGCCCTTCCCAGCCTCTCCTGCTAGAAAGGAGATC CTCACTGATGCAAAATGCCCCTGTGGGGCAGGTCCCTGCCTCCACAACTACCCCCACCTG CCCCTCCCCACCTCCACAGCCCTGTGCATCCCAGACCTGGCCCCCCAGCGCCCCACTTAG ACAGCCTGGGGGGGAGTTTGCACTTTATTCCCGGCTGGGGTGGGGCCCAGCCCCTCCCTG CTTAAAGAATGCTCTTCGTGCACTGATCGCATCCCAGGAACACAGCAGAGCTCAGGACAG CCCATGGGAGGCCGGACGGACTGTAATTGATGGCTTGACAGTGATTATGGAATAAAATTG GGTACAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 46-237, gnl|bosTau2|chr13 (54488952-54489149) | |
| 46-237, gnl|Hg17|chr20 (43953613-43953813) | |
| 46-237, gnl|Mm7|chr2 (164574682-164574867) | |
| 483-645, gnl|bosTau2|chr13 (54490277-54490439) | |
| 483-645, gnl|canFam2|chr24 (36160881-36161048) | |
| 483-645, gnl|danRer3|chrNA (28465663-28465830) | |
| 483-645, gnl|dasNov1|scaffold_82 (90984-91151) | |
| 483-645, gnl|fr1|chrUn (290406255-290406420) | |
| 483-645, gnl|galGal2|chr20 (10043975-10044144) | |
| 483-645, gnl|hg17|chr20 (43954764-43954931) | |
| 483-645, gnl|Hg17|chr20 (43954771-43954933) | |
| 483-645, gnl|loxAfr1|scaffold_18997 (20959-21126) | |
| 483-645, gnl|mm7|chr2 (164575803-164575970) | |
| 483-645, gnl|Mm7|chr2 (164575810-164575972) | |
| 483-645, gnl|monDom2|scaffold_35 (25225188-25225302) | |
| 483-645, gnl|oryCun1|scaffold_153723 (15441-15274) | |
| 483-645, gnl|panTro1|chr21 (46477773-46477940) | |
| 483-645, gnl|rheMac2|chr10 (18602443-18602276) | |
| 483-645, gnl|rn3|chr3 (155773648-155773813) | |
| 483-645, gnl|tetNig1|chrUn_random (86401689-86401527) | |
| 483-645, gnl|xenTro1|scaffold_131 (1609938-1609772) | |
| 984-1126, gnl|bosTau2|chr13 (54492968-54493110) | |
| 984-1126, gnl|Hg17|chr20 (43957037-43957179) | |
| 984-1126, gnl|Mm7|chr2 (164578008-164578150) | |
| 1200-1354, gnl|bosTau2|chr13 (54494528-54494679) | |
| 1200-1354, gnl|canFam2|chr24 (36164561-36164666) | |
| 1200-1354, gnl|danRer3|chr7 (52555096-52555194) | |
| 1200-1354, gnl|dasNov1|scaffold_82 (94477-94582) | |
| 1200-1354, gnl|echTel1|scaffold_324580 (189092-188987) | |
| 1200-1354, gnl|fr1|chrUn (290409512-290409610) | |
| 1200-1354, gnl|galGal2|chr20 (10045681-10045781) | |
| 1200-1354, gnl|hg17|chr20 (43959755-43959860) | |
| 1200-1354, gnl|Hg17|chr20 (43959760-43959944) | |
| 1200-1354, gnl|loxAfr1|scaffold_18997 (25067-25172) | |
| 1200-1354, gnl|mm7|chr2 (164579287-164579392) | |
| 1200-1354, gnl|Mm7|chr2 (164579292-164579414) | |
| 1200-1354, gnl|monDom2|scaffold_35 (25228226-25228331) | |
| 1200-1354, gnl|oryCun1|scaffold_153723 (12180-12072) | |
| 1200-1354, gnl|panTro1|chr21 (46483752-46483857) | |
| 1200-1354, gnl|rheMac2|chr10 (18597463-18597358) | |
| 1200-1354, gnl|rn3|chr3 (155777077-155777182) | |
| 1200-1354, gnl|tetNig1|chrUn_random (86399922-86399824) | |
| 1200-1354, gnl|xenTro1|scaffold_131 (1605464-1605364) | |
| 1387-1874, gnl|bosTau2|chr13 (54495133-54495589) | |
| 1387-1874, gnl|Hg17|chr20 (43960402-43960866) | |
| 1387-1874, gnl|Mm7|chr2 (164579794-164580238) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-237, gnl|bosTau2|chr13 (54488952-54489149) | |
| 46-237, gnl|Hg17|chr20 (43953613-43953813) | |
| 46-237, gnl|Mm7|chr2 (164574682-164574867) | |
| 483-645, gnl|bosTau2|chr13 (54490277-54490439) | |
| 483-645, gnl|canFam2|chr24 (36160881-36161048) | |
| 483-645, gnl|danRer3|chrNA (28465663-28465830) | |
| 483-645, gnl|dasNov1|scaffold_82 (90984-91151) | |
| 483-645, gnl|fr1|chrUn (290406255-290406420) | |
| 483-645, gnl|galGal2|chr20 (10043975-10044144) | |
| 483-645, gnl|hg17|chr20 (43954764-43954931) | |
| 483-645, gnl|Hg17|chr20 (43954771-43954933) | |
| 483-645, gnl|loxAfr1|scaffold_18997 (20959-21126) | |
| 483-645, gnl|mm7|chr2 (164575803-164575970) | |
| 483-645, gnl|Mm7|chr2 (164575810-164575972) | |
| 483-645, gnl|monDom2|scaffold_35 (25225188-25225302) | |
| 483-645, gnl|oryCun1|scaffold_153723 (15441-15274) | |
| 483-645, gnl|panTro1|chr21 (46477773-46477940) | |
| 483-645, gnl|rheMac2|chr10 (18602443-18602276) | |
| 483-645, gnl|rn3|chr3 (155773648-155773813) | |
| 483-645, gnl|tetNig1|chrUn_random (86401689-86401527) | |
| 483-645, gnl|xenTro1|scaffold_131 (1609938-1609772) | |
| 984-1126, gnl|bosTau2|chr13 (54492968-54493110) | |
| 984-1126, gnl|Hg17|chr20 (43957037-43957179) | |
| 984-1126, gnl|Mm7|chr2 (164578008-164578150) | |
| 1200-1354, gnl|bosTau2|chr13 (54494528-54494679) | |
| 1200-1354, gnl|canFam2|chr24 (36164561-36164666) | |
| 1200-1354, gnl|danRer3|chr7 (52555096-52555194) | |
| 1200-1354, gnl|dasNov1|scaffold_82 (94477-94582) | |
| 1200-1354, gnl|echTel1|scaffold_324580 (189092-188987) | |
| 1200-1354, gnl|fr1|chrUn (290409512-290409610) | |
| 1200-1354, gnl|galGal2|chr20 (10045681-10045781) | |
| 1200-1354, gnl|hg17|chr20 (43959755-43959860) | |
| 1200-1354, gnl|Hg17|chr20 (43959760-43959944) | |
| 1200-1354, gnl|loxAfr1|scaffold_18997 (25067-25172) | |
| 1200-1354, gnl|mm7|chr2 (164579287-164579392) | |
| 1200-1354, gnl|Mm7|chr2 (164579292-164579414) | |
| 1200-1354, gnl|monDom2|scaffold_35 (25228226-25228331) | |
| 1200-1354, gnl|oryCun1|scaffold_153723 (12180-12072) | |
| 1200-1354, gnl|panTro1|chr21 (46483752-46483857) | |
| 1200-1354, gnl|rheMac2|chr10 (18597463-18597358) | |
| 1200-1354, gnl|rn3|chr3 (155777077-155777182) | |
| 1200-1354, gnl|tetNig1|chrUn_random (86399922-86399824) | |
| 1200-1354, gnl|xenTro1|scaffold_131 (1605464-1605364) | |
| 1387-1874, gnl|bosTau2|chr13 (54495133-54495589) | |
| 1387-1874, gnl|Hg17|chr20 (43960402-43960866) | |
| 1387-1874, gnl|Mm7|chr2 (164579794-164580238) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| nje (0.99552) | |
| ute (0.531138) | |
| pla (0.401016) | |
| clu (0.358938) | |
| mcp (0.341297) | |
| csp (0.322373) | |
| nmm (0.265604) | |
| cov (0.264306) | |
| cty (0.20816) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nco (0.161734) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.99552) | |
| ute (0.531138) | |
| pla (0.401016) | |
| clu (0.358938) | |
| mcp (0.341297) | |
| csp (0.322373) | |
| nmm (0.265604) | |
| cov (0.264306) | |
| cty (0.20816) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nco (0.161734) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jej (0.0989218) | |
| eje (0.0988338) |