Non-Coding RNA Search

Ss1.1-reje37b_m13.5

Sequence:


               
               GGCCAGCAGAGAAGGAGAATAATACTGGAGTGGTCAGTCAGACCTTCAAATGCAGTGTAA
AAGGCTCTGGGATCTCTAGCTATGCGGAAAACCCCCAGGATGTCCCCAAAGCCTTTGAGG
ATTGCATGCAAAAAGTCAAGGGGCAGATTCCAGCCCACCTCCATGGATCCACCTGCATTT
ACCTCGGGGCCACGGCTGGAATGCGCTTGCTGAGGTTGCAAAACGAAACAGCAGCTAATG
AAGTCCTTGCAAGCATCCAAAACTACTTCGAGTCTCAGCCCTTTGATTTTAGGGGTGCTC
AAATCATTTCTGGGCAAGAGGAAGGGATATATGGATGGATTACAGCCAACTATTTAATGG
GAAATTTCCTGGAGAAGAGTCTGTGGCATATGTGGGTGCATCCGAATGGAGTAGAGACCA
CAGGTGCCCTGGATTTAGGTGGTGCCTCCACCCAAATATCTTTCGCAACAGAAGAGAAGG
TGGGGCTGAACACCAGCGACATTATGAAGGTGTCCCTGTATGGCTATGAGTACACACTCT
ACACACATAGCTTCCAGTGCTACGGCCGGAATGAGGCTGAAAAGAGGTTTCTGGCACTTC
TTCAGGAGTCTTCCACAGAGACCACATTCACTAACCCCTGTTACCCTCGGAATTACAATA
CCACCTTCACCTCAGCACACGTGTTTGGCAGCCTGTGCACAGTGGACCTGAGACCTGAAA
CTTATGACCCTGACAACATCATCACTTTTGAAGGAACTGGGGACCCATCACTGTGTAGGG
AAAAGGTGGCATCTCTATTTAACTTCAAAGCTTGCCATGACCAAGAAGCCTGTTCCTTCA
ATGGGGTGTATCAGCCAAAAGTTAAAGGGTCATTTGTGGCTTTTGCAGGATTCTACTACA
CAGCCAGTGCTTTCAACCTCTCTGGGAGCTTTTCCCTACACACCTTCAACTCAAGCATGT
GGAATTTCTGCTCACAGAATTGGAGTCAGCTTCCGCTGCTGCTTCCCCGGTTTGATGAGG
AGTATGCGCGCTCCTACTGCTTCTCAGCCCACTACATCTACCACTTGCTTGTAAATGGAT
ACAAATTCACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCAGCAGAGAAGGAGAATAATACTGGAGTGGTCAGTCAGACCTTCAAATGCAGTGTAA
AAGGCTCTGGGATCTCTAGCTATGCGGAAAACCCCCAGGATGTCCCCAAAGCCTTTGAGG
ATTGCATGCAAAAAGTCAAGGGGCAGATTCCAGCCCACCTCCATGGATCCACCTGCATTT
ACCTCGGGGCCACGGCTGGAATGCGCTTGCTGAGGTTGCAAAACGAAACAGCAGCTAATG
AAGTCCTTGCAAGCATCCAAAACTACTTCGAGTCTCAGCCCTTTGATTTTAGGGGTGCTC
AAATCATTTCTGGGCAAGAGGAAGGGATATATGGATGGATTACAGCCAACTATTTAATGG
GAAATTTCCTGGAGAAGAGTCTGTGGCATATGTGGGTGCATCCGAATGGAGTAGAGACCA
CAGGTGCCCTGGATTTAGGTGGTGCCTCCACCCAAATATCTTTCGCAACAGAAGAGAAGG
TGGGGCTGAACACCAGCGACATTATGAAGGTGTCCCTGTATGGCTATGAGTACACACTCT
ACACACATAGCTTCCAGTGCTACGGCCGGAATGAGGCTGAAAAGAGGTTTCTGGCACTTC
TTCAGGAGTCTTCCACAGAGACCACATTCACTAACCCCTGTTACCCTCGGAATTACAATA
CCACCTTCACCTCAGCACACGTGTTTGGCAGCCTGTGCACAGTGGACCTGAGACCTGAAA
CTTATGACCCTGACAACATCATCACTTTTGAAGGAACTGGGGACCCATCACTGTGTAGGG
AAAAGGTGGCATCTCTATTTAACTTCAAAGCTTGCCATGACCAAGAAGCCTGTTCCTTCA
ATGGGGTGTATCAGCCAAAAGTTAAAGGGTCATTTGTGGCTTTTGCAGGATTCTACTACA
CAGCCAGTGCTTTCAACCTCTCTGGGAGCTTTTCCCTACACACCTTCAACTCAAGCATGT
GGAATTTCTGCTCACAGAATTGGAGTCAGCTTCCGCTGCTGCTTCCCCGGTTTGATGAGG
AGTATGCGCGCTCCTACTGCTTCTCAGCCCACTACATCTACCACTTGCTTGTAAATGGAT
ACAAATTCACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61878523|ref|XP_582482.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61878523|ref|XP_582482.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               206-374, gnl|bosTau2|chr22 (11583185-11583353)
               

               
               206-374, gnl|Hg17|chr3 (40431167-40431335)
               

               
               206-374, gnl|Mm7|chr9 (120255716-120255884)
               


               
               600-879, gnl|bosTau2|chr22 (11589261-11589540)
               

               
               600-879, gnl|Hg17|chr3 (40439339-40439618)
               

               
               600-879, gnl|Mm7|chr9 (120258808-120259087)
               


               
               986-1090, gnl|bosTau2|chr22 (11590659-11590763)
               

               
               986-1090, gnl|Hg17|chr3 (40440317-40440421)
               

               
               986-1090, gnl|Mm7|chr9 (120260228-120260332)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               206-374, gnl|bosTau2|chr22 (11583185-11583353)
               

               
               206-374, gnl|Hg17|chr3 (40431167-40431335)
               

               
               206-374, gnl|Mm7|chr9 (120255716-120255884)
               


               
               600-879, gnl|bosTau2|chr22 (11589261-11589540)
               

               
               600-879, gnl|Hg17|chr3 (40439339-40439618)
               

               
               600-879, gnl|Mm7|chr9 (120258808-120259087)
               


               
               986-1090, gnl|bosTau2|chr22 (11590659-11590763)
               

               
               986-1090, gnl|Hg17|chr3 (40440317-40440421)
               

               
               986-1090, gnl|Mm7|chr9 (120260228-120260332)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               eje (0.197668)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eje (0.197668)
               

               
               pgl (0.118483)

	206-374, gnl\|bosTau2\|chr22 (11583185-11583353)
	206-374, gnl\|Hg17\|chr3 (40431167-40431335)
	206-374, gnl\|Mm7\|chr9 (120255716-120255884)

	600-879, gnl\|bosTau2\|chr22 (11589261-11589540)
	600-879, gnl\|Hg17\|chr3 (40439339-40439618)
	600-879, gnl\|Mm7\|chr9 (120258808-120259087)

	986-1090, gnl\|bosTau2\|chr22 (11590659-11590763)
	986-1090, gnl\|Hg17\|chr3 (40440317-40440421)
	986-1090, gnl\|Mm7\|chr9 (120260228-120260332)