Ss1.1-reje39b_h3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGGACCACCAGCACGGCACGGCGGTACTGCTTCTTCACCTGGCCGGGCGTCACCAGGT CGGCCATGCCCACGGGCGTCCAGCGGCTCTCGCCGTCCCACAGCACAGTGTGCAGCGTGG ACAGCAGGGCGCGGATGTTCCTCTCCTTGCCCTCCGTCCAGTCCTGGAGCTTCAGCTTGA GCGGGTCGGTGTCTCGGGCCTGGTCCTGTCTCCTCATCTCGGCCACGGTCCTCGGCCCCC TCCGGTCGGCCCGGGAGGAGAAGCCCTGGCTGGACAGCAGGTCCTCAAAGTCGTTCTCTG ACACCCGCGGCCTCGGACCAAAGCCAGGGGCGCGGACCCCCCTCTCCTCCCGGCTGCCGA TCACGCTGAAGCCGGGCGTGTAGTTGGGCCTTGGCTGTGCAGTGGCTTTGGGGGGTGGCC TGGCCTGGGGATGCCAGGAGGTGCCCTGGGCCGAAGGCCGACTTGTCTGCCAGGAGCCGC TGGCCTTGGGAAGGGCTCCTGTTTTGGGACCAAAGCCCCCAGGAGGAGGTGCAGCAGGCG AACCTTGGAGGCTGGAGCTGAGGTCACCGAGGTCAGCAAACGGGTCCTGGTTCTGAGACT GGGGCTGGCTGGCCGGGGGGCCAGGAGGGGCCGGCTGGCCTCCGGGAGAGAAGAAGGGGC CTTCTGTGGCCGACGTGGGAGCCGAAGCCTCAGGCCCAGGCGTCCCATCACTCCTAGCAG GTCCGGGTGGCTGGTGGAGGCCGTCACCCTGCTGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGGACCACCAGCACGGCACGGCGGTACTGCTTCTTCACCTGGCCGGGCGTCACCAGGT CGGCCATGCCCACGGGCGTCCAGCGGCTCTCGCCGTCCCACAGCACAGTGTGCAGCGTGG ACAGCAGGGCGCGGATGTTCCTCTCCTTGCCCTCCGTCCAGTCCTGGAGCTTCAGCTTGA GCGGGTCGGTGTCTCGGGCCTGGTCCTGTCTCCTCATCTCGGCCACGGTCCTCGGCCCCC TCCGGTCGGCCCGGGAGGAGAAGCCCTGGCTGGACAGCAGGTCCTCAAAGTCGTTCTCTG ACACCCGCGGCCTCGGACCAAAGCCAGGGGCGCGGACCCCCCTCTCCTCCCGGCTGCCGA TCACGCTGAAGCCGGGCGTGTAGTTGGGCCTTGGCTGTGCAGTGGCTTTGGGGGGTGGCC TGGCCTGGGGATGCCAGGAGGTGCCCTGGGCCGAAGGCCGACTTGTCTGCCAGGAGCCGC TGGCCTTGGGAAGGGCTCCTGTTTTGGGACCAAAGCCCCCAGGAGGAGGTGCAGCAGGCG AACCTTGGAGGCTGGAGCTGAGGTCACCGAGGTCAGCAAACGGGTCCTGGTTCTGAGACT GGGGCTGGCTGGCCGGGGGGCCAGGAGGGGCCGGCTGGCCTCCGGGAGAGAAGAAGGGGC CTTCTGTGGCCGACGTGGGAGCCGAAGCCTCAGGCCCAGGCGTCCCATCACTCCTAGCAG GTCCGGGTGGCTGGTGGAGGCCGTCACCCTGCTGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 431-548, + strand, RNAz p=0.9592 | |
| 437-548, - strand, RNAz p=0.995255 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 431-548, + strand, RNAz p=0.9592 | |
| 437-548, - strand, RNAz p=0.995255 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-171, gnl|bosTau2|chr6 (63652971-63652801) | |
| 1-171, gnl|canFam2|chr3 (94455614-94455426) | |
| 1-171, gnl|danRer3|chrUn (128725342-128725159) | |
| 1-171, gnl|dasNov1|scaffold_63877 (3286-3474) | |
| 1-171, gnl|echTel1|scaffold_57572 (1134-1322) | |
| 1-171, gnl|fr1|chrUn (166668275-166668461) | |
| 1-171, gnl|galGal2|chrZ (25261920-25262108) | |
| 1-171, gnl|hg17|chr4 (833506-833694) | |
| 1-171, gnl|Hg17|chr4 (833518-833688) | |
| 1-171, gnl|loxAfr1|scaffold_8339 (41288-41100) | |
| 1-171, gnl|mm7|chr5 (107751066-107751251) | |
| 1-171, gnl|Mm7|chr5 (107751078-107751248) | |
| 1-171, gnl|monDom2|scaffold_10 (49567928-49567741) | |
| 1-171, gnl|oryCun1|scaffold_213013 (36084-36241) | |
| 1-171, gnl|panTro1|chr3 (887728-887916) | |
| 1-171, gnl|rheMac2|chr1 (3121669-3121481) | |
| 1-171, gnl|rn3|chr14 (1709668-1709483) | |
| 1-171, gnl|tetNig1|chr12 (5423613-5423426) | |
| 1-171, gnl|xenTro1|scaffold_868 (393945-394133) | |
| 317-548, gnl|bosTau2|chr6 (63651588-63651357) | |
| 317-548, gnl|canFam2|chr3 (94454104-94453936) | |
| 317-548, gnl|danRer3|chrUn (128721403-128721233) | |
| 317-548, gnl|echTel1|scaffold_260380 (941-1109) | |
| 317-548, gnl|galGal2|chrZ (25264955-25265099) | |
| 317-548, gnl|hg17|chr4 (835359-835524) | |
| 317-548, gnl|Hg17|chr4 (835366-835597) | |
| 317-548, gnl|loxAfr1|scaffold_41336 (6499-6667) | |
| 317-548, gnl|mm7|chr5 (107752795-107752948) | |
| 317-548, gnl|Mm7|chr5 (107752802-107753021) | |
| 317-548, gnl|monDom2|scaffold_10 (49558452-49558290) | |
| 317-548, gnl|oryCun1|scaffold_213013 (36351-36503) | |
| 317-548, gnl|panTro1|chr3 (889582-889747) | |
| 317-548, gnl|rheMac2|chr1 (3119853-3119688) | |
| 317-548, gnl|rn3|chr14 (1707982-1707829) | |
| 317-548, gnl|xenTro1|scaffold_868 (396007-396172) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-171, gnl|bosTau2|chr6 (63652971-63652801) | |
| 1-171, gnl|canFam2|chr3 (94455614-94455426) | |
| 1-171, gnl|danRer3|chrUn (128725342-128725159) | |
| 1-171, gnl|dasNov1|scaffold_63877 (3286-3474) | |
| 1-171, gnl|echTel1|scaffold_57572 (1134-1322) | |
| 1-171, gnl|fr1|chrUn (166668275-166668461) | |
| 1-171, gnl|galGal2|chrZ (25261920-25262108) | |
| 1-171, gnl|hg17|chr4 (833506-833694) | |
| 1-171, gnl|Hg17|chr4 (833518-833688) | |
| 1-171, gnl|loxAfr1|scaffold_8339 (41288-41100) | |
| 1-171, gnl|mm7|chr5 (107751066-107751251) | |
| 1-171, gnl|Mm7|chr5 (107751078-107751248) | |
| 1-171, gnl|monDom2|scaffold_10 (49567928-49567741) | |
| 1-171, gnl|oryCun1|scaffold_213013 (36084-36241) | |
| 1-171, gnl|panTro1|chr3 (887728-887916) | |
| 1-171, gnl|rheMac2|chr1 (3121669-3121481) | |
| 1-171, gnl|rn3|chr14 (1709668-1709483) | |
| 1-171, gnl|tetNig1|chr12 (5423613-5423426) | |
| 1-171, gnl|xenTro1|scaffold_868 (393945-394133) | |
| 317-548, gnl|bosTau2|chr6 (63651588-63651357) | |
| 317-548, gnl|canFam2|chr3 (94454104-94453936) | |
| 317-548, gnl|danRer3|chrUn (128721403-128721233) | |
| 317-548, gnl|echTel1|scaffold_260380 (941-1109) | |
| 317-548, gnl|galGal2|chrZ (25264955-25265099) | |
| 317-548, gnl|hg17|chr4 (835359-835524) | |
| 317-548, gnl|Hg17|chr4 (835366-835597) | |
| 317-548, gnl|loxAfr1|scaffold_41336 (6499-6667) | |
| 317-548, gnl|mm7|chr5 (107752795-107752948) | |
| 317-548, gnl|Mm7|chr5 (107752802-107753021) | |
| 317-548, gnl|monDom2|scaffold_10 (49558452-49558290) | |
| 317-548, gnl|oryCun1|scaffold_213013 (36351-36503) | |
| 317-548, gnl|panTro1|chr3 (889582-889747) | |
| 317-548, gnl|rheMac2|chr1 (3119853-3119688) | |
| 317-548, gnl|rn3|chr14 (1707982-1707829) | |
| 317-548, gnl|xenTro1|scaffold_868 (396007-396172) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eje (0.0988338) |