Non-Coding RNA Search

Ss1.1-reje40b_e12.5

Sequence:


               
               GCTGCAGGAAAATGAGTGACAGGAAAGTCACCCAAATACAGGTTCAGGATACATCTTTTG
CTGATTGCTTTTTGTTTCATGGTGATTTAAGATTTTTTTTTTCCCAAGTTAATAATGGGC
AGGTCTCTTGGAACAAAAACCGAGCTGATACATGCTCTCCCCAAATCAGTGACATCATGT
ACCTTTTGTATTAGGCGTTTGCAGAAATGTGGTGGCCTTTCAGTAAAACGAATTATTCAG
CTCTTGTGGGCAATTACTAGATGGAACTAGCTCTTAGAAAAAGCACTCTAAAAAATAATT
AATCAAATACTCTTTCAGAAAATAGACTGTCTCAGTGGTTGCATTTCCGTAAGTAGAAAG
ATCACCCTCAAAATCTCTGGCCCACCAAGTACCTCACGGAACTTATGTATATGTGTGGGG
GTAGCATAAAAGATCTTGTAAATTACCTGTATCCACTTTCAACCTTTTTTTAACATAACA
TTCACATTTTTTATGTTCTATTTGCTTTTGATAATTAGTAAGACAATTTAAAAATTAATC
CTATGGTAATATTTTTCATGTAGAAAACTAATAATGTAGTTAAACATACTGTTGGAGTAG
AATTATAATAAATGACACATTTTCCTAAACCCTGAAAATACCAAATTATACAGGGAATTG
GTAGAAAGAATCAAACTTAGGAATTATGTTGCAAAATTCAATTACTGAAATTAAGATGAT
TGTTTTCAATGAGAATTAATTTTATAAATACGACGAAAATATATAAAAAGATATTTCCGA
GCCTTAGGAGATTTTTTTTCCCTTTGGCTTCTATTCAATTTAGCACCGCCATGCACCATA
TTAATTTAATGAACATAAGTGATACTCTTTCATTTTAAAATACATTTAACTTTCTCTCCT
TTTAGAAGTTATCAGAATCTGTACTAAGTTAGCTATGTTTCACCGGTTTCACTTAATGAA
CACTTAGGGTAGTTAATCTGGTTAGAGCCTTGCTATTTTACTTACCATTACCACTTACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCAGGAAAATGAGTGACAGGAAAGTCACCCAAATACAGGTTCAGGATACATCTTTTG
CTGATTGCTTTTTGTTTCATGGTGATTTAAGATTTTTTTTTTCCCAAGTTAATAATGGGC
AGGTCTCTTGGAACAAAAACCGAGCTGATACATGCTCTCCCCAAATCAGTGACATCATGT
ACCTTTTGTATTAGGCGTTTGCAGAAATGTGGTGGCCTTTCAGTAAAACGAATTATTCAG
CTCTTGTGGGCAATTACTAGATGGAACTAGCTCTTAGAAAAAGCACTCTAAAAAATAATT
AATCAAATACTCTTTCAGAAAATAGACTGTCTCAGTGGTTGCATTTCCGTAAGTAGAAAG
ATCACCCTCAAAATCTCTGGCCCACCAAGTACCTCACGGAACTTATGTATATGTGTGGGG
GTAGCATAAAAGATCTTGTAAATTACCTGTATCCACTTTCAACCTTTTTTTAACATAACA
TTCACATTTTTTATGTTCTATTTGCTTTTGATAATTAGTAAGACAATTTAAAAATTAATC
CTATGGTAATATTTTTCATGTAGAAAACTAATAATGTAGTTAAACATACTGTTGGAGTAG
AATTATAATAAATGACACATTTTCCTAAACCCTGAAAATACCAAATTATACAGGGAATTG
GTAGAAAGAATCAAACTTAGGAATTATGTTGCAAAATTCAATTACTGAAATTAAGATGAT
TGTTTTCAATGAGAATTAATTTTATAAATACGACGAAAATATATAAAAAGATATTTCCGA
GCCTTAGGAGATTTTTTTTCCCTTTGGCTTCTATTCAATTTAGCACCGCCATGCACCATA
TTAATTTAATGAACATAAGTGATACTCTTTCATTTTAAAATACATTTAACTTTCTCTCCT
TTTAGAAGTTATCAGAATCTGTACTAAGTTAGCTATGTTTCACCGGTTTCACTTAATGAA
CACTTAGGGTAGTTAATCTGGTTAGAGCCTTGCTATTTTACTTACCATTACCACTTACAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               9-1017, gnl|bosTau2|chr16 (4739700-4738663)
               

               
               9-1017, gnl|Hg17|chr1 (189789730-189791073)
               

               
               9-1017, gnl|Mm7|chr1 (143679914-143678810)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1017, gnl|bosTau2|chr16 (4739700-4738663)
               

               
               9-1017, gnl|Hg17|chr1 (189789730-189791073)
               

               
               9-1017, gnl|Mm7|chr1 (143679914-143678810)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	9-1017, gnl\|bosTau2\|chr16 (4739700-4738663)
	9-1017, gnl\|Hg17\|chr1 (189789730-189791073)
	9-1017, gnl\|Mm7\|chr1 (143679914-143678810)