Non-Coding RNA Search

Ss1.1-reje40b_j21.5

Sequence:


               
               AAAGACTTCTGAATGTTTAATAAGTTTGTACATCATTCTCTTTACACAGAGTACCACTTA
TTTAATAAGACGGGATGTAAATTTACGACGACAAATGTGTATTTTAAGAAAGAAAATTAC
CTTATTTTGAACGGTACTTTGTGGAAAGAGGTGGAGAATAAATTTATGCCACGCGCATCA
CTTGCAAAAATCACCAAAAACCCTCCGCCGCCCGGGAGGGCCGGGCGGGCACGTCCTCCC
GCCAGCCTCCGCCTGCCCGCCCCAGGCTCCCACGGGTGTGCCTCCCAGCGGGTTATTTAT
TGTAGAAAGTGTATTCATTTGCTTTATAATGAAAAATAAATTTGCAAAAGTATATTGATA
TGCATTTTTATACAGGCACATAAAAATTCAACTTACTTTGGGAGCAGGATGTGTTGGTTG
GTGTATAAATGACTGGCTGTGTGTTTTTGATTTTGTAACTTGTAGTCTTTTGTTTACAAC
GAGGGGCTTTTTCTGTAACTTGTTTTCGTTTAGGAGACTTTGGTAGCATAGGGACTTTGG
ATACTTTTTGTATGGTACATGTGATGTATATAGAATTAGGACTTTATTTTTATTTCTAAG
AGGTAAAGCATTATGTTAGGGGAAACGGCGGGGTGGGTTTCCAAAATGGCATTTTTATAT
TAAAAAATAAAGTCAAGATTTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGACTTCTGAATGTTTAATAAGTTTGTACATCATTCTCTTTACACAGAGTACCACTTA
TTTAATAAGACGGGATGTAAATTTACGACGACAAATGTGTATTTTAAGAAAGAAAATTAC
CTTATTTTGAACGGTACTTTGTGGAAAGAGGTGGAGAATAAATTTATGCCACGCGCATCA
CTTGCAAAAATCACCAAAAACCCTCCGCCGCCCGGGAGGGCCGGGCGGGCACGTCCTCCC
GCCAGCCTCCGCCTGCCCGCCCCAGGCTCCCACGGGTGTGCCTCCCAGCGGGTTATTTAT
TGTAGAAAGTGTATTCATTTGCTTTATAATGAAAAATAAATTTGCAAAAGTATATTGATA
TGCATTTTTATACAGGCACATAAAAATTCAACTTACTTTGGGAGCAGGATGTGTTGGTTG
GTGTATAAATGACTGGCTGTGTGTTTTTGATTTTGTAACTTGTAGTCTTTTGTTTACAAC
GAGGGGCTTTTTCTGTAACTTGTTTTCGTTTAGGAGACTTTGGTAGCATAGGGACTTTGG
ATACTTTTTGTATGGTACATGTGATGTATATAGAATTAGGACTTTATTTTTATTTCTAAG
AGGTAAAGCATTATGTTAGGGGAAACGGCGGGGTGGGTTTCCAAAATGGCATTTTTATAT
TAAAAAATAAAGTCAAGATTTGGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.977799
               

               
               268-387, + strand, RNAz p=0.969788

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.977799
               

               
               268-387, + strand, RNAz p=0.969788

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               312-387, + strand, RNAmicro p=0.922155

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               312-387, + strand, RNAmicro p=0.922155

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014577, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014577, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-684, gnl|bosTau2|chr5 (76390120-76390806)
               

               
               1-684, gnl|Hg17|chr22 (48488467-48487792)
               

               
               1-684, gnl|Mm7|chr15 (88771277-88770590)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr5 (76390120-76390806)
               

               
               1-684, gnl|Hg17|chr22 (48488467-48487792)
               

               
               1-684, gnl|Mm7|chr15 (88771277-88770590)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               fbs (0.175346)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               fbs (0.175346)
               

               
               eje (0.0988338)

	40-159, - strand, RNAz p=0.977799
	268-387, + strand, RNAz p=0.969788

	1-684, gnl\|bosTau2\|chr5 (76390120-76390806)
	1-684, gnl\|Hg17\|chr22 (48488467-48487792)
	1-684, gnl\|Mm7\|chr15 (88771277-88770590)