Non-Coding RNA Search

Ss1.1-reje40b_k12.5

Sequence:


               
               GGCTGCAGTTCTGTCCGAGTCCTGGGCTCCTCATGAATATGAACTGAAGGGCTCTGACCC
AGAAAGTGGTTCTGAGTGGGGTAAAATGGGGTCTCGGAAATGTGGATGCTGCCTGAGTAG
TCTGCTGATTCCGCTGGCACTTTGGAGCATAATTGTGAACATATTACTGTATTTCCCAAA
TGGACAAATGTCCTATGCATCCAGCAATAAACTCACCAACTACGTGTGGTATTTTGAAGG
GCTCTGTTTCTCAGGTATCATGATGCTTATAGTAGCAGCAGTTCTTCTTGTACTGGAGAA
TGATAACAACTATAAATGTTGCCAGAGCGAAAACTGCAGCAAAAAGTACATGATACTGAT
GTCGATGATCTTTTCGGCCCTTGGAATTGCTTTCTCTGGATACTGCCTGGTCATATCTGC
TTTGGGCCTTCTTCAGGGCCCATACTGCCGTACCCTCGATGGTTGGGAGTACGCCTTTGA
AGGCACAGCAGGACGTTTCCTTACAGATTCCAGCACATGGAGTCAGTGCCTAGAACCTGC
ACATGTAGTAGAGTGGAACATCATTTTATTTTCCATTCTCATAGCTCTCAGTGGGCTTCA
GGTGATTGTCTGCCTCATCAGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGCAGTTCTGTCCGAGTCCTGGGCTCCTCATGAATATGAACTGAAGGGCTCTGACCC
AGAAAGTGGTTCTGAGTGGGGTAAAATGGGGTCTCGGAAATGTGGATGCTGCCTGAGTAG
TCTGCTGATTCCGCTGGCACTTTGGAGCATAATTGTGAACATATTACTGTATTTCCCAAA
TGGACAAATGTCCTATGCATCCAGCAATAAACTCACCAACTACGTGTGGTATTTTGAAGG
GCTCTGTTTCTCAGGTATCATGATGCTTATAGTAGCAGCAGTTCTTCTTGTACTGGAGAA
TGATAACAACTATAAATGTTGCCAGAGCGAAAACTGCAGCAAAAAGTACATGATACTGAT
GTCGATGATCTTTTCGGCCCTTGGAATTGCTTTCTCTGGATACTGCCTGGTCATATCTGC
TTTGGGCCTTCTTCAGGGCCCATACTGCCGTACCCTCGATGGTTGGGAGTACGCCTTTGA
AGGCACAGCAGGACGTTTCCTTACAGATTCCAGCACATGGAGTCAGTGCCTAGAACCTGC
ACATGTAGTAGAGTGGAACATCATTTTATTTTCCATTCTCATAGCTCTCAGTGGGCTTCA
GGTGATTGTCTGCCTCATCAGAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61816822|ref|XP_583866.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61816822|ref|XP_583866.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               378-495, + strand, RNAz p=0.791168

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               378-495, + strand, RNAz p=0.791168

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               68-262, gnl|bosTau2|chr1 (75456266-75456460)
               

               
               68-262, gnl|canFam2|chr23 (47155913-47156166)
               

               
               68-262, gnl|dasNov1|scaffold_16915 (561-301)
               

               
               68-262, gnl|echTel1|scaffold_284512 (45974-46247)
               

               
               68-262, gnl|galGal2|chr9 (23318644-23318369)
               

               
               68-262, gnl|hg17|chr3 (150533676-150533935)
               

               
               68-262, gnl|Hg17|chr3 (150533885-150533691)
               

               
               68-262, gnl|monDom2|scaffold_28 (20954429-20954702)
               

               
               68-262, gnl|oryCun1|scaffold_170187 (11066-10811)
               

               
               68-262, gnl|panTro1|chr2 (153558806-153559065)
               

               
               68-262, gnl|rheMac2|chr2 (138465637-138465378)
               


               
               352-495, gnl|bosTau2|chr1 (75473946-75474089)
               

               
               352-495, gnl|Hg17|chr3 (150525508-150525365)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-262, gnl|bosTau2|chr1 (75456266-75456460)
               

               
               68-262, gnl|canFam2|chr23 (47155913-47156166)
               

               
               68-262, gnl|dasNov1|scaffold_16915 (561-301)
               

               
               68-262, gnl|echTel1|scaffold_284512 (45974-46247)
               

               
               68-262, gnl|galGal2|chr9 (23318644-23318369)
               

               
               68-262, gnl|hg17|chr3 (150533676-150533935)
               

               
               68-262, gnl|Hg17|chr3 (150533885-150533691)
               

               
               68-262, gnl|monDom2|scaffold_28 (20954429-20954702)
               

               
               68-262, gnl|oryCun1|scaffold_170187 (11066-10811)
               

               
               68-262, gnl|panTro1|chr2 (153558806-153559065)
               

               
               68-262, gnl|rheMac2|chr2 (138465637-138465378)
               


               
               352-495, gnl|bosTau2|chr1 (75473946-75474089)
               

               
               352-495, gnl|Hg17|chr3 (150525508-150525365)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               eje (0.0988338)

	68-262, gnl\|bosTau2\|chr1 (75456266-75456460)
	68-262, gnl\|canFam2\|chr23 (47155913-47156166)
	68-262, gnl\|dasNov1\|scaffold_16915 (561-301)
	68-262, gnl\|echTel1\|scaffold_284512 (45974-46247)
	68-262, gnl\|galGal2\|chr9 (23318644-23318369)
	68-262, gnl\|hg17\|chr3 (150533676-150533935)
	68-262, gnl\|Hg17\|chr3 (150533885-150533691)
	68-262, gnl\|monDom2\|scaffold_28 (20954429-20954702)
	68-262, gnl\|oryCun1\|scaffold_170187 (11066-10811)
	68-262, gnl\|panTro1\|chr2 (153558806-153559065)
	68-262, gnl\|rheMac2\|chr2 (138465637-138465378)

	352-495, gnl\|bosTau2\|chr1 (75473946-75474089)
	352-495, gnl\|Hg17\|chr3 (150525508-150525365)