Non-Coding RNA Search

Ss1.1-reje40b_k20.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCAGATAGCCTCTTGCTGGCC
TCTCTCCACATCTTTTGTTGAAACACATAAAGACCATCTTTTCGCTGCTTCGGGACCTTA
GCTACCCGTGACAGGTGTAAGCGCAGTGAGAATGTGGTGGAGACGCATTTTTGAAAATTT
ATTGGCAGCTCAGAGACTGTGTTTTCCCAGCTTAGGCCCTGTATTCATTGGTCAAGGTTT
CCTCCAGAAAGGCCACCTCAGCCAGGAGAACATTTATCACACTGCTGGGCGCAGGTTTCT
GTTACCTTCCTTCCGTCTCTGCTTTGTGGTCCCCCAGCAATAACACTCACTCTTGCTGTC
TTGTGCATCTCCAACAGGCAGACTCAGTTTCCTCCCTCCGGACATGTCCATACGTGTTTC
ACACGCAAACTGTTGAGTCGGGTTTTTCAGCTGTCACCAGCCCACGTCATACTGTCTCTG
TGTGGTCCTCCCAAAGCCATCCGTTCAGGTCCCTTTGCTTTGCCATTTGCAAGTGTCTGA
GGTGGTCGAGTCTCAGCTTCCAGAAGTCTTGGTTCTGGGGACAGGAAACCTAGATGGTGA
CTCTTTAGGGGAAGTGGTGGCATACAAAGTCTAGAGCATATGGCAGTATGAAGGGAGTTT
TTAAAATAAATCGAAGATGAAGCTGTGAACAGCATTAGAACTTTGTCTCTCTGTTCATTT
GAAACTATGCTGATATGCCTTAAACTGTAGTTGTAGCTCATTGTCATTTTGCTGTTTGAA
AATAACCAATGTGTTTTTTAAACTGTTGTATAATCTACCTTCAGTGTTAATGCCGAATTG
TCATCTATGTAAACTGCATGTTAGACACGTGTCTTTTTTTTAAAAAACTAAAATAATTGT
ATCGATGTGAAGGCGTATCCTGTTGGAAGTGTGACAGTAATCCCTTACGGACGTCCCCGG
TGATGTGGTGTCCTGTTAAGGCAGGAGCATGGCGGCCAGGCCATCTATGCATTTAGCACT
AGTGCCAAGACGTTACCCCCGGGGGGAAATATATTTTTACCCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCAGATAGCCTCTTGCTGGCC
TCTCTCCACATCTTTTGTTGAAACACATAAAGACCATCTTTTCGCTGCTTCGGGACCTTA
GCTACCCGTGACAGGTGTAAGCGCAGTGAGAATGTGGTGGAGACGCATTTTTGAAAATTT
ATTGGCAGCTCAGAGACTGTGTTTTCCCAGCTTAGGCCCTGTATTCATTGGTCAAGGTTT
CCTCCAGAAAGGCCACCTCAGCCAGGAGAACATTTATCACACTGCTGGGCGCAGGTTTCT
GTTACCTTCCTTCCGTCTCTGCTTTGTGGTCCCCCAGCAATAACACTCACTCTTGCTGTC
TTGTGCATCTCCAACAGGCAGACTCAGTTTCCTCCCTCCGGACATGTCCATACGTGTTTC
ACACGCAAACTGTTGAGTCGGGTTTTTCAGCTGTCACCAGCCCACGTCATACTGTCTCTG
TGTGGTCCTCCCAAAGCCATCCGTTCAGGTCCCTTTGCTTTGCCATTTGCAAGTGTCTGA
GGTGGTCGAGTCTCAGCTTCCAGAAGTCTTGGTTCTGGGGACAGGAAACCTAGATGGTGA
CTCTTTAGGGGAAGTGGTGGCATACAAAGTCTAGAGCATATGGCAGTATGAAGGGAGTTT
TTAAAATAAATCGAAGATGAAGCTGTGAACAGCATTAGAACTTTGTCTCTCTGTTCATTT
GAAACTATGCTGATATGCCTTAAACTGTAGTTGTAGCTCATTGTCATTTTGCTGTTTGAA
AATAACCAATGTGTTTTTTAAACTGTTGTATAATCTACCTTCAGTGTTAATGCCGAATTG
TCATCTATGTAAACTGCATGTTAGACACGTGTCTTTTTTTTAAAAAACTAAAATAATTGT
ATCGATGTGAAGGCGTATCCTGTTGGAAGTGTGACAGTAATCCCTTACGGACGTCCCCGG
TGATGTGGTGTCCTGTTAAGGCAGGAGCATGGCGGCCAGGCCATCTATGCATTTAGCACT
AGTGCCAAGACGTTACCCCCGGGGGGAAATATATTTTTACCCCCAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               25-1062, gnl|bosTau2|chr6 (48226936-48227947)
               

               
               25-1062, gnl|Hg17|chr4 (78315932-78316939)
               

               
               25-1062, gnl|Mm7|chr5 (93161230-93162202)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-1062, gnl|bosTau2|chr6 (48226936-48227947)
               

               
               25-1062, gnl|Hg17|chr4 (78315932-78316939)
               

               
               25-1062, gnl|Mm7|chr5 (93161230-93162202)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               gul (0.355177)
               

               
               fat (0.294855)
               

               
               eep (0.245128)
               

               
               nms (0.213858)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               fat (0.294855)
               

               
               eep (0.245128)
               

               
               nms (0.213858)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	25-1062, gnl\|bosTau2\|chr6 (48226936-48227947)
	25-1062, gnl\|Hg17\|chr4 (78315932-78316939)
	25-1062, gnl\|Mm7\|chr5 (93161230-93162202)

	gul (0.355177)
	fat (0.294855)
	eep (0.245128)
	nms (0.213858)
	eje (0.197668)
	nep (0.183925)
	fty (0.17584)
	sin (0.174948)
	eye (0.170503)
	pla (0.133672)
	thg (0.126791)
	ese (0.126502)
	ebs (0.118301)
	jca (0.11396)