Non-Coding RNA Search

Ss1.1-reli1106b_p13.5

Sequence:


               
               ACTGAGCCCTTCCAGATCTCGCTGCCTACCTCGGAGCTGGCCAGCAGCAGCACAGATAGC
TCAGGGGCCAGCTCAGAGGATGAGGATGACAGCACCCTGGAGTTGCTTGCACCCAAGTCC
CGCAGCCCCAGCCCTGGCAAGTCCAAGAGGCACCGTAGCCGCAGCCCAGGCCTGGCCCGC
TTCCCCGGCCTCGCCCTTCGGCCCTCGTCCCGTGAACGCCGTGGCACCAGCAGAAGCCCC
TCACCTCAGAGCCGCCGCCTGCCCTGGGTGGCCCCTGACAGGGGAAGCGATAGTGGCAGC
CGGGGAAGCAGTGAGGAGGGGGTCCCTGGGCCGCCTGGGCCCTGGGCCTTCCAGCCACCT
GTGCCTCAAAGCCTGGGCTTGCTGCCTGCCTTGCGCCTAGAGACTGTAGATCCTGGCGGT
GGTAGTTCCTGGGGACCTGATCGAGAGGTCCCGGCCCCCAATGGCCTGTCTCCGAGCCCC
CAGTGTCGGCAGGGGCTGGAGGGAGGGGGCCTGGGGCCCTGAGGGTGGGGCAGGAAGGTG
GGCCCAAGTGGCCCCACTCTGGCCCAATCTTCTGCAAACCACCTGCCTCCCTCCTGCTGC
TGCTCCAGCTTTATCTGCACCTGCCACTCTGTTCTGGCTAAGGGTGGCCCACTGAAGTCC
CCTAAACTTGGTCCTGGCACTTCGACTGTGACAATCAGCAAAACCCTATCTGGGCCCCCA
TCTAGGGTGGGGGAGCAAACCTGGAGGTCATCAATTAGGAATTAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGAGCCCTTCCAGATCTCGCTGCCTACCTCGGAGCTGGCCAGCAGCAGCACAGATAGC
TCAGGGGCCAGCTCAGAGGATGAGGATGACAGCACCCTGGAGTTGCTTGCACCCAAGTCC
CGCAGCCCCAGCCCTGGCAAGTCCAAGAGGCACCGTAGCCGCAGCCCAGGCCTGGCCCGC
TTCCCCGGCCTCGCCCTTCGGCCCTCGTCCCGTGAACGCCGTGGCACCAGCAGAAGCCCC
TCACCTCAGAGCCGCCGCCTGCCCTGGGTGGCCCCTGACAGGGGAAGCGATAGTGGCAGC
CGGGGAAGCAGTGAGGAGGGGGTCCCTGGGCCGCCTGGGCCCTGGGCCTTCCAGCCACCT
GTGCCTCAAAGCCTGGGCTTGCTGCCTGCCTTGCGCCTAGAGACTGTAGATCCTGGCGGT
GGTAGTTCCTGGGGACCTGATCGAGAGGTCCCGGCCCCCAATGGCCTGTCTCCGAGCCCC
CAGTGTCGGCAGGGGCTGGAGGGAGGGGGCCTGGGGCCCTGAGGGTGGGGCAGGAAGGTG
GGCCCAAGTGGCCCCACTCTGGCCCAATCTTCTGCAAACCACCTGCCTCCCTCCTGCTGC
TGCTCCAGCTTTATCTGCACCTGCCACTCTGTTCTGGCTAAGGGTGGCCCACTGAAGTCC
CCTAAACTTGGTCCTGGCACTTCGACTGTGACAATCAGCAAAACCCTATCTGGGCCCCCA
TCTAGGGTGGGGGAGCAAACCTGGAGGTCATCAATTAGGAATTAAATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               371-601, - strand, RNAz p=0.993212

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               371-601, - strand, RNAz p=0.993212

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               404-532, + strand, RNAmicro p=0.999349
               

               
               485-630, - strand, RNAmicro p=0.996341

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               404-532, + strand, RNAmicro p=0.999349
               

               
               485-630, - strand, RNAmicro p=0.996341

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-768, gnl|bosTau2|chr17 (44251090-44250335)
               

               
               12-768, gnl|Hg17|chr22 (29854449-29855226)
               

               
               12-768, gnl|Mm7|chr11 (3447173-3446396)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-768, gnl|bosTau2|chr17 (44251090-44250335)
               

               
               12-768, gnl|Hg17|chr22 (29854449-29855226)
               

               
               12-768, gnl|Mm7|chr11 (3447173-3446396)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nmm (0.265604)
               

               
               eli (0.151814)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               eli (0.151814)
               

               
               clu (0.119646)

	404-532, + strand, RNAmicro p=0.999349
	485-630, - strand, RNAmicro p=0.996341

	12-768, gnl\|bosTau2\|chr17 (44251090-44250335)
	12-768, gnl\|Hg17\|chr22 (29854449-29855226)
	12-768, gnl\|Mm7\|chr11 (3447173-3446396)