Ss1.1-reli1108b_e18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCACTTTTGGAAGATTCATTCAGGGGTCGTGTCCACCCAGATGTCTGAAATCCTATAGC TGCGGGCAGCGATCCCCAGAGTGGAGTGCAGTGTGGAGGCTGAGTGCTGAGAAGAGGCAG CCTGGGGCAAGGCTGGTCCACCCTCCTGGGTTCCAGGAGTGGACCATAAACTCACCAGGA GGACTATGAGTGAAGAGACGGTCCCCGAGGCCGCCTCCCCGCCGCCCGCGCAGGGGCGGC AGTACTTCGACCGGTTCTCTGAGGAAGACCCTGAGTACCTGCGCCTTCGCAACCGTGCGG CGGACCTGCGGCAGGACTTCAACCTGATGGAGCAGAAGAAGCGCGTCACCATGATCCTGC AGAGCCCGTCTTTCAGGGAGGAGCTGGAAGGCCTCATCCAGGAGCAGATGAAGAAGGGGA ACAACTCCTCCAACATCTGGGCCCTGCGGCAGATCGCGGACTTCATGGCCAGCACCTCCC ACGCAGTCTTCCCAACATCTTCCATGAATTTCTCCATGATGACGCCCATCAATGACCTCC ACACAGCTGACTCCTTGAACCTGGCCAAGGGCGAGCGGCTCATGCGGTGCAAGATCAGCA GTGTCTACCGCCTCCTGGACCTCTATGGCTGGGCCCAGCTGAGTGACACCTACGTCACAC TGAGAGTCAGCAAGGAGCAGGACCACTTCCTAATCAGCCCGAAGGGAGTTTCTTGCAGTG AAGTCACAGCATCCAGCCTGATCAAGGTGAACATCCTGGGAGAGGTGGTGGAGAAGGGCA GCAGCTGCTTCCCGGTGGACACCACAGGCTTCTGTCTGCACTCTGCCATCTACGCTGCCA GACCCGACGTCCGCTGCATCATCCACCTTCACACCCCAGCCACCGCGGCGGTGTCAGCCA TGAAGTGGGGCCTCCTGCCTGTGTCCCACAACGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCACTTTTGGAAGATTCATTCAGGGGTCGTGTCCACCCAGATGTCTGAAATCCTATAGC TGCGGGCAGCGATCCCCAGAGTGGAGTGCAGTGTGGAGGCTGAGTGCTGAGAAGAGGCAG CCTGGGGCAAGGCTGGTCCACCCTCCTGGGTTCCAGGAGTGGACCATAAACTCACCAGGA GGACTATGAGTGAAGAGACGGTCCCCGAGGCCGCCTCCCCGCCGCCCGCGCAGGGGCGGC AGTACTTCGACCGGTTCTCTGAGGAAGACCCTGAGTACCTGCGCCTTCGCAACCGTGCGG CGGACCTGCGGCAGGACTTCAACCTGATGGAGCAGAAGAAGCGCGTCACCATGATCCTGC AGAGCCCGTCTTTCAGGGAGGAGCTGGAAGGCCTCATCCAGGAGCAGATGAAGAAGGGGA ACAACTCCTCCAACATCTGGGCCCTGCGGCAGATCGCGGACTTCATGGCCAGCACCTCCC ACGCAGTCTTCCCAACATCTTCCATGAATTTCTCCATGATGACGCCCATCAATGACCTCC ACACAGCTGACTCCTTGAACCTGGCCAAGGGCGAGCGGCTCATGCGGTGCAAGATCAGCA GTGTCTACCGCCTCCTGGACCTCTATGGCTGGGCCCAGCTGAGTGACACCTACGTCACAC TGAGAGTCAGCAAGGAGCAGGACCACTTCCTAATCAGCCCGAAGGGAGTTTCTTGCAGTG AAGTCACAGCATCCAGCCTGATCAAGGTGAACATCCTGGGAGAGGTGGTGGAGAAGGGCA GCAGCTGCTTCCCGGTGGACACCACAGGCTTCTGTCTGCACTCTGCCATCTACGCTGCCA GACCCGACGTCCGCTGCATCATCCACCTTCACACCCCAGCCACCGCGGCGGTGTCAGCCA TGAAGTGGGGCCTCCTGCCTGTGTCCCACAACGCCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 148-368, gnl|bosTau2|chr11 (11563921-11564138) | |
| 148-368, gnl|Hg17|chr2 (70845230-70845013) | |
| 148-368, gnl|Mm7|chr6 (86160913-86161130) | |
| 510-671, gnl|bosTau2|chr11 (11575597-11575757) | |
| 510-671, gnl|Hg17|chr2 (70835181-70835021) | |
| 510-671, gnl|Mm7|chr6 (86167912-86168074) | |
| 737-893, gnl|bosTau2|chr11 (11579460-11579616) | |
| 737-893, gnl|canFam2|chr10 (72233201-72233387) | |
| 737-893, gnl|danRer3|chr5 (4533100-4533276) | |
| 737-893, gnl|dasNov1|scaffold_4856 (68655-68493) | |
| 737-893, gnl|echTel1|scaffold_243857 (852-684) | |
| 737-893, gnl|fr1|chrUn (108014124-108013961) | |
| 737-893, gnl|galGal2|chr6 (24863194-24863019) | |
| 737-893, gnl|hg17|chr2 (70831169-70831345) | |
| 737-893, gnl|Hg17|chr2 (70831343-70831187) | |
| 737-893, gnl|loxAfr1|scaffold_1027 (23760-23917) | |
| 737-893, gnl|mm7|chr6 (86171956-86171768) | |
| 737-893, gnl|Mm7|chr6 (86171768-86171924) | |
| 737-893, gnl|monDom2|scaffold_1 (93194055-93193871) | |
| 737-893, gnl|oryCun1|scaffold_84672 (3942-4141) | |
| 737-893, gnl|panTro1|chr12 (73158783-73158959) | |
| 737-893, gnl|rheMac2|chr13 (70997482-70997658) | |
| 737-893, gnl|rn3|chr4 (120497545-120497357) | |
| 737-893, gnl|tetNig1|chr12 (11355399-11355239) | |
| 737-893, gnl|xenTro1|scaffold_110 (1848465-1848625) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 148-368, gnl|bosTau2|chr11 (11563921-11564138) | |
| 148-368, gnl|Hg17|chr2 (70845230-70845013) | |
| 148-368, gnl|Mm7|chr6 (86160913-86161130) | |
| 510-671, gnl|bosTau2|chr11 (11575597-11575757) | |
| 510-671, gnl|Hg17|chr2 (70835181-70835021) | |
| 510-671, gnl|Mm7|chr6 (86167912-86168074) | |
| 737-893, gnl|bosTau2|chr11 (11579460-11579616) | |
| 737-893, gnl|canFam2|chr10 (72233201-72233387) | |
| 737-893, gnl|danRer3|chr5 (4533100-4533276) | |
| 737-893, gnl|dasNov1|scaffold_4856 (68655-68493) | |
| 737-893, gnl|echTel1|scaffold_243857 (852-684) | |
| 737-893, gnl|fr1|chrUn (108014124-108013961) | |
| 737-893, gnl|galGal2|chr6 (24863194-24863019) | |
| 737-893, gnl|hg17|chr2 (70831169-70831345) | |
| 737-893, gnl|Hg17|chr2 (70831343-70831187) | |
| 737-893, gnl|loxAfr1|scaffold_1027 (23760-23917) | |
| 737-893, gnl|mm7|chr6 (86171956-86171768) | |
| 737-893, gnl|Mm7|chr6 (86171768-86171924) | |
| 737-893, gnl|monDom2|scaffold_1 (93194055-93193871) | |
| 737-893, gnl|oryCun1|scaffold_84672 (3942-4141) | |
| 737-893, gnl|panTro1|chr12 (73158783-73158959) | |
| 737-893, gnl|rheMac2|chr13 (70997482-70997658) | |
| 737-893, gnl|rn3|chr4 (120497545-120497357) | |
| 737-893, gnl|tetNig1|chr12 (11355399-11355239) | |
| 737-893, gnl|xenTro1|scaffold_110 (1848465-1848625) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eli (0.151814) | |
| ecc (0.115035) |