Non-Coding RNA Search

Ss1.1-reli1108b_k4.5

Sequence:


               
               TTTGTGATTCTCCTTAGCACAAATAGTCATGATTTTTCTCCCAAATCAAGTATTCTCCTT
CTCCCTCTTGAGTCCCCATGCTTTCTCTCCCTCTTGCTGCTGTTGCCCAGGAAATGGGAT
GGTAGTGCGGGAGAATATGTTCATTGCACAGAGAATGTCAGGCCACTTTTTGGACTTGGC
AAACAAAGCTTGCCTTGAGTGGTGGTGTGTTTGGCAGTATTTCTGTGCCAAAAATCACTT
TGTCTAATTTTCTGGATATGTATGTCAAACTTATTACCCTTATAGCAAGCTGAAAATTAA
GGTACTTGTGTTTATGCTTTTGTGTAACTGTTTGCCTTTTCTAAACTGTTCTTCTTGTTA
TCCTAAAATATAATTCTGTTGGTTATATCATGTTAAGTGAAGAGGCTCTCCGTGCACAAA
ACACGTCTATGTAGCAGTAAGGCAACAGCATTTGTACATTTTCTGTCTGTCTCCCGATGG
CAGTGGTGCCTTTGTCACCTTTTGGAAGGTTGACATTTTGGTTTTGTTTTGAAGGACAAG
TACTATCTTGCTTTTGACTTCACAGAAATCTCCCCAGATGTAAAAGATAGAAAATGGCGT
GTTGTCATCCAGGTTTAGTTGGAGCATTTGCATTTTCCTCTTTGTCAAAACATGTGTAGG
TTGGTGGGGATTGGCCAGTAATAATGTGTGGAGTCTTTAAACAAGAGTAATTGTGAAATT
TTTTTAAAAAAAAGTAAAACTGAAGAGACGACCCATTAACAAATGACCTAGTTGGAGAAT
TAGGGGAAGACTGTCTTGGTTTGTCTTAAGAAAGCAAGCTTAGGCTGCAGGCGACTGGGC
ATGTAGAGCATGAGCCGAGATTAGTTCTTACTCATTAACGGTGCTGCGGCACCTCCTTAC
CTGTGCATTTGTTTTCTCTGGGCAGTCATGTCAGCCAGTTAATCCACCAGCTTTTAGGAA
GTTTACAAGTAAATGCAGATTTTCTTTTTCTTTCCTTTTTTTTTTTTTAAGATTTTATAC
TACATCTTGTTTAAAGTCCTATGAATGTATGTGCCTGTTATTAAAACGGCTTTTTCTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTGATTCTCCTTAGCACAAATAGTCATGATTTTTCTCCCAAATCAAGTATTCTCCTT
CTCCCTCTTGAGTCCCCATGCTTTCTCTCCCTCTTGCTGCTGTTGCCCAGGAAATGGGAT
GGTAGTGCGGGAGAATATGTTCATTGCACAGAGAATGTCAGGCCACTTTTTGGACTTGGC
AAACAAAGCTTGCCTTGAGTGGTGGTGTGTTTGGCAGTATTTCTGTGCCAAAAATCACTT
TGTCTAATTTTCTGGATATGTATGTCAAACTTATTACCCTTATAGCAAGCTGAAAATTAA
GGTACTTGTGTTTATGCTTTTGTGTAACTGTTTGCCTTTTCTAAACTGTTCTTCTTGTTA
TCCTAAAATATAATTCTGTTGGTTATATCATGTTAAGTGAAGAGGCTCTCCGTGCACAAA
ACACGTCTATGTAGCAGTAAGGCAACAGCATTTGTACATTTTCTGTCTGTCTCCCGATGG
CAGTGGTGCCTTTGTCACCTTTTGGAAGGTTGACATTTTGGTTTTGTTTTGAAGGACAAG
TACTATCTTGCTTTTGACTTCACAGAAATCTCCCCAGATGTAAAAGATAGAAAATGGCGT
GTTGTCATCCAGGTTTAGTTGGAGCATTTGCATTTTCCTCTTTGTCAAAACATGTGTAGG
TTGGTGGGGATTGGCCAGTAATAATGTGTGGAGTCTTTAAACAAGAGTAATTGTGAAATT
TTTTTAAAAAAAAGTAAAACTGAAGAGACGACCCATTAACAAATGACCTAGTTGGAGAAT
TAGGGGAAGACTGTCTTGGTTTGTCTTAAGAAAGCAAGCTTAGGCTGCAGGCGACTGGGC
ATGTAGAGCATGAGCCGAGATTAGTTCTTACTCATTAACGGTGCTGCGGCACCTCCTTAC
CTGTGCATTTGTTTTCTCTGGGCAGTCATGTCAGCCAGTTAATCCACCAGCTTTTAGGAA
GTTTACAAGTAAATGCAGATTTTCTTTTTCTTTCCTTTTTTTTTTTTTAAGATTTTATAC
TACATCTTGTTTAAAGTCCTATGAATGTATGTGCCTGTTATTAAAACGGCTTTTTCTCAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               88-206, - strand, RNAz p=0.603696
               

               
               478-596, + strand, RNAz p=0.852219

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-206, - strand, RNAz p=0.603696
               

               
               478-596, + strand, RNAz p=0.852219

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF460991, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF460991, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-1080, gnl|bosTau2|chr26 (13371248-13372307)
               

               
               11-1080, gnl|Hg17|chr10 (102713820-102714875)
               

               
               11-1080, gnl|Mm7|chr19 (44876593-44877653)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-1080, gnl|bosTau2|chr26 (13371248-13372307)
               

               
               11-1080, gnl|Hg17|chr10 (102713820-102714875)
               

               
               11-1080, gnl|Mm7|chr19 (44876593-44877653)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	88-206, - strand, RNAz p=0.603696
	478-596, + strand, RNAz p=0.852219

	11-1080, gnl\|bosTau2\|chr26 (13371248-13372307)
	11-1080, gnl\|Hg17\|chr10 (102713820-102714875)
	11-1080, gnl\|Mm7\|chr19 (44876593-44877653)

	fhi (0.169578)
	csp (0.161186)
	fco (0.157208)
	eli (0.151814)
	hyp (0.142837)
	csk (0.140746)
	pla (0.133672)
	thg (0.126791)
	bla (0.124347)
	jej (0.0989218)
	ldo (0.0970026)