Non-Coding RNA Search

Ss1.1-reli1116b_g3.5

Sequence:


               
               CTTCGAGAGCTCCGAGTCGCTGCTGCAGTCCTGGACCAGCCAGTCGTCTCTGCTGGACGT
GCAGCGGGTCCCTTCCTTCGAGAGCTTCGAGGACGACTGCAGCCAGTCCCTCTGCCTCAA
CAAGCCGACCATGTCTTTCAAGGATTACATCCAGGAGAGGAGCGACCCGGTGGAACAAGG
CAAACCAGTTATACCTGCGGCCGTGCTGGCCGGCTTCACAGGAAGTGGACCTATCCAGTT
GTGGCAGTTCCTCCTAGAATTGCTCTCCGACAAATCCTGCCAGTCTTTCATCAGCTGGAC
GGGGGACGGATGGGAGTTTAAGCTCGCTGACCCAGATGAGGTGGCCCGCCGGTGGGGCAA
GAGGAAAAACAAGCCCAAGATGAACTACGAGAAGCTGAGCCGAGGTCTGCGCTATTACTA
CGACAAAAACATCATCCACAAGACCTCGGGCAAGCGCTACGTGTACCGCTTCGTGTGCGA
CCTCCAGAACCTGCTGGGGTTCACGCCCGAGGAGCTGCACGCCATCCTGGGCGTCCAGCC
GGACACGGAGGACTGAGGCCGCCCGGGGCGGTCCTCACCCATCTCACACGGACCCTAAAC
GGCGGGATCGATGCGTCCGGCAAGGTCTCCAAGAAGCAGTGGCCTTATTTCATCCGAAAC
GGCGGTCCTTCGCCGAAAGCAGCGGGGGTTCTCGCTTCTAAAGCCTGCTGACAGGGACAC
AGTATTTATGATGCTCTTACCTTAGAGTGGCCTCGAAGGACACGCTGGGCCGCCGGCCTG
GCTCCAGCAGACTGCGTTGTAACAGGATCCCTGGGGCTGGTGGGGCTTCTCCAAGGAGCG
AGCGGGTCGTGGACACACATGCTTCTTTGGATTTTCTTTTGCTGTGGCCGCCGGGAATCG
CAAATGCAAAAGAGGTCTCTGTGGTTCAGAGGGGGAGAAGGTGCCAGGACCACTCATTCC
ATTTCAGAAGTTAGTTTGTATATAGGACGGTCATCTTACCGTTGGTATCCAAACCCCCCC
CAACAGTCCTATTTAACAGAAATTGTATATTGTAATTTAAAATAATTATATAACTGTATG
TGAACGAAGAAGGCAGACATCCCGTGTGTATTCCATTTTTCAAGAGCACAGATGGCATTT
TGCAAACATTTAACCCGCCAAGGGCGGGCTGAGGCAGGTTGTACAGTGTGTATGATTAAC
AGTTATTATATGTACAGGAATAAGGTCTAAGAGGGTTACTATTCCTGTGTTCTGTTTTTT
TGGCTTGCTTGGGTTATTATCTATGGCAAGGACTTTGTACATTTGGGAATTTTTATAAGA
AACTTAATGTTATTGTCTGGGGGCCCGTCCGGCCTCTCTCCTCTCCTTCAATTGTAAAGT
AAAAGCTATAAAGCAGTATTTTTCTTGACACTTGGCACATGTTCTCCATTTCTATGCATG
CCTTTAAATCGGTTTCTACACAAAACTTCGTTTTTAGTTCGGTTCTGTTTTCCCAACGAC
TAACCTCCCCCAATCACAGCCATTTCCTCTCAGCGCCCCACCCCCGCACCCCAACGTCTT
CTGTACGATTAAAATAGGAATACTATTTTTGGAAACCGGCGACTCCTTTTCAGAGATCAG
GAGGGATTTATGTAGCAGCTATTTTTACTGCAAAAGTAATTCACTGGGGAAAAAAAATGG
AATTTGTAAGAAAGTTTTATTTTTATCTCAGCGCCATGTAAAGTTAACCTATTGTACAGA
GCTGAAGGTTCGGGATGGGGGGGGAGTCTTTATTAAACCTCTTGGATGTGAGCGAAGCAT
GATTTGTCCCATCCTGTTCACCTGTCACGTCTTGGGCTTTCTGGATACCCAGCTGCTGCT
TTCTGTTTCGAGTCTGCCGTTTCTTGCTTGTTTGTTTTCTTATTTTCTCAGACACAGAAT
GCCCGGAGGCAAAGAGAGGGTAAGCAGATGGGGAAGAAAAGGCATTGGGATCATTCAGCC
TTGAACAGGGTGGAGACTTTTGTAGCCGTTTCAGAGGAACCCCTGGGTCAGTATGTGCTC
CTGGCTTTGGTGAATGATCAAGTCGAGTTGACTTCAAAGTCAGACGGCCTTCCCTAGCAA
CATGAGGGACAAGTGGGCCAGCAATGACATCTGCAAAGAAGAATCGAACCATCCATGCGA
TGAGCGGGAACGGGGCATTGGGTGGTGGGGCAAGCAAAGGACAGAACCAGCACGGGGGTG
ACTCGGTCTCAGTCCTGACCCAAGATCCCTTCCCATGTCTTTAAGCACAGGATGTTTTTC
TCACGCAGGACCTGTTTATCTCTCGGACATCTGTTTAAAACATCAACAGACATGTGACTG
GAATATCTTGCTGCTGAAAGAAATCTCAGCCATCAGCTCGTTTTACGTGGGGTTGGACCC
TGTGAAACTGCCAATATTTGTCTGTTTTATCTACAGGGTTGGCAGTTTCATGTGGTTCAA
CTCAAAGAGTTATGGGACATTAAAAGTCCCTTGTCAACCTTTGGCGTGGTAAAGAACAGA
ACTTAAGTATAAAAATTTTGTAATTTGGCTTTTTCTCTCTCCAATAATAAAGTATTTTGT
TTATACAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCGAGAGCTCCGAGTCGCTGCTGCAGTCCTGGACCAGCCAGTCGTCTCTGCTGGACGT
GCAGCGGGTCCCTTCCTTCGAGAGCTTCGAGGACGACTGCAGCCAGTCCCTCTGCCTCAA
CAAGCCGACCATGTCTTTCAAGGATTACATCCAGGAGAGGAGCGACCCGGTGGAACAAGG
CAAACCAGTTATACCTGCGGCCGTGCTGGCCGGCTTCACAGGAAGTGGACCTATCCAGTT
GTGGCAGTTCCTCCTAGAATTGCTCTCCGACAAATCCTGCCAGTCTTTCATCAGCTGGAC
GGGGGACGGATGGGAGTTTAAGCTCGCTGACCCAGATGAGGTGGCCCGCCGGTGGGGCAA
GAGGAAAAACAAGCCCAAGATGAACTACGAGAAGCTGAGCCGAGGTCTGCGCTATTACTA
CGACAAAAACATCATCCACAAGACCTCGGGCAAGCGCTACGTGTACCGCTTCGTGTGCGA
CCTCCAGAACCTGCTGGGGTTCACGCCCGAGGAGCTGCACGCCATCCTGGGCGTCCAGCC
GGACACGGAGGACTGAGGCCGCCCGGGGCGGTCCTCACCCATCTCACACGGACCCTAAAC
GGCGGGATCGATGCGTCCGGCAAGGTCTCCAAGAAGCAGTGGCCTTATTTCATCCGAAAC
GGCGGTCCTTCGCCGAAAGCAGCGGGGGTTCTCGCTTCTAAAGCCTGCTGACAGGGACAC
AGTATTTATGATGCTCTTACCTTAGAGTGGCCTCGAAGGACACGCTGGGCCGCCGGCCTG
GCTCCAGCAGACTGCGTTGTAACAGGATCCCTGGGGCTGGTGGGGCTTCTCCAAGGAGCG
AGCGGGTCGTGGACACACATGCTTCTTTGGATTTTCTTTTGCTGTGGCCGCCGGGAATCG
CAAATGCAAAAGAGGTCTCTGTGGTTCAGAGGGGGAGAAGGTGCCAGGACCACTCATTCC
ATTTCAGAAGTTAGTTTGTATATAGGACGGTCATCTTACCGTTGGTATCCAAACCCCCCC
CAACAGTCCTATTTAACAGAAATTGTATATTGTAATTTAAAATAATTATATAACTGTATG
TGAACGAAGAAGGCAGACATCCCGTGTGTATTCCATTTTTCAAGAGCACAGATGGCATTT
TGCAAACATTTAACCCGCCAAGGGCGGGCTGAGGCAGGTTGTACAGTGTGTATGATTAAC
AGTTATTATATGTACAGGAATAAGGTCTAAGAGGGTTACTATTCCTGTGTTCTGTTTTTT
TGGCTTGCTTGGGTTATTATCTATGGCAAGGACTTTGTACATTTGGGAATTTTTATAAGA
AACTTAATGTTATTGTCTGGGGGCCCGTCCGGCCTCTCTCCTCTCCTTCAATTGTAAAGT
AAAAGCTATAAAGCAGTATTTTTCTTGACACTTGGCACATGTTCTCCATTTCTATGCATG
CCTTTAAATCGGTTTCTACACAAAACTTCGTTTTTAGTTCGGTTCTGTTTTCCCAACGAC
TAACCTCCCCCAATCACAGCCATTTCCTCTCAGCGCCCCACCCCCGCACCCCAACGTCTT
CTGTACGATTAAAATAGGAATACTATTTTTGGAAACCGGCGACTCCTTTTCAGAGATCAG
GAGGGATTTATGTAGCAGCTATTTTTACTGCAAAAGTAATTCACTGGGGAAAAAAAATGG
AATTTGTAAGAAAGTTTTATTTTTATCTCAGCGCCATGTAAAGTTAACCTATTGTACAGA
GCTGAAGGTTCGGGATGGGGGGGGAGTCTTTATTAAACCTCTTGGATGTGAGCGAAGCAT
GATTTGTCCCATCCTGTTCACCTGTCACGTCTTGGGCTTTCTGGATACCCAGCTGCTGCT
TTCTGTTTCGAGTCTGCCGTTTCTTGCTTGTTTGTTTTCTTATTTTCTCAGACACAGAAT
GCCCGGAGGCAAAGAGAGGGTAAGCAGATGGGGAAGAAAAGGCATTGGGATCATTCAGCC
TTGAACAGGGTGGAGACTTTTGTAGCCGTTTCAGAGGAACCCCTGGGTCAGTATGTGCTC
CTGGCTTTGGTGAATGATCAAGTCGAGTTGACTTCAAAGTCAGACGGCCTTCCCTAGCAA
CATGAGGGACAAGTGGGCCAGCAATGACATCTGCAAAGAAGAATCGAACCATCCATGCGA
TGAGCGGGAACGGGGCATTGGGTGGTGGGGCAAGCAAAGGACAGAACCAGCACGGGGGTG
ACTCGGTCTCAGTCCTGACCCAAGATCCCTTCCCATGTCTTTAAGCACAGGATGTTTTTC
TCACGCAGGACCTGTTTATCTCTCGGACATCTGTTTAAAACATCAACAGACATGTGACTG
GAATATCTTGCTGCTGAAAGAAATCTCAGCCATCAGCTCGTTTTACGTGGGGTTGGACCC
TGTGAAACTGCCAATATTTGTCTGTTTTATCTACAGGGTTGGCAGTTTCATGTGGTTCAA
CTCAAAGAGTTATGGGACATTAAAAGTCCCTTGTCAACCTTTGGCGTGGTAAAGAACAGA
ACTTAAGTATAAAAATTTTGTAATTTGGCTTTTTCTCTCTCCAATAATAAAGTATTTTGT
TTATACAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|182271|gb|AAA52411.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|182271|gb|AAA52411.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1186-1283, - strand, RNAz p=0.826978
               

               
               2241-2515, - strand, RNAz p=0.999683

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1186-1283, - strand, RNAz p=0.826978
               

               
               2241-2515, - strand, RNAz p=0.999683

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-222, gnl|bosTau2|chr1 (97652480-97652701)
               

               
               1-222, gnl|Hg17|chr21 (39113340-39113561)
               

               
               1-222, gnl|Mm7|chr16 (96022665-96022886)
               


               
               339-2583, gnl|bosTau2|chr1 (97655404-97657619)
               

               
               339-2583, gnl|Hg17|chr21 (39116466-39118743)
               

               
               339-2583, gnl|Mm7|chr16 (96025509-96027631)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-222, gnl|bosTau2|chr1 (97652480-97652701)
               

               
               1-222, gnl|Hg17|chr21 (39113340-39113561)
               

               
               1-222, gnl|Mm7|chr16 (96022665-96022886)
               


               
               339-2583, gnl|bosTau2|chr1 (97655404-97657619)
               

               
               339-2583, gnl|Hg17|chr21 (39116466-39118743)
               

               
               339-2583, gnl|Mm7|chr16 (96025509-96027631)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               cbl (0.688784)
               

               
               cki (0.330469)
               

               
               nco (0.323468)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               tra (0.246184)
               

               
               eep (0.245128)
               

               
               jca (0.22792)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.688784)
               

               
               cki (0.330469)
               

               
               nco (0.323468)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               tra (0.246184)
               

               
               eep (0.245128)
               

               
               jca (0.22792)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	1186-1283, - strand, RNAz p=0.826978
	2241-2515, - strand, RNAz p=0.999683

	1-222, gnl\|bosTau2\|chr1 (97652480-97652701)
	1-222, gnl\|Hg17\|chr21 (39113340-39113561)
	1-222, gnl\|Mm7\|chr16 (96022665-96022886)

	339-2583, gnl\|bosTau2\|chr1 (97655404-97657619)
	339-2583, gnl\|Hg17\|chr21 (39116466-39118743)
	339-2583, gnl\|Mm7\|chr16 (96025509-96027631)

	cbl (0.688784)
	cki (0.330469)
	nco (0.323468)
	cga (0.279096)
	nmm (0.265604)
	tra (0.246184)
	eep (0.245128)
	jca (0.22792)
	eje (0.197668)
	nep (0.183925)
	rec (0.17307)
	duo (0.172801)
	eye (0.170503)
	cut (0.169924)
	fhi (0.169578)
	nje (0.16592)
	csp (0.161186)
	cli (0.152812)
	eli (0.151814)
	cag (0.151194)
	hlv (0.139256)
	pla (0.133672)
	cov (0.132153)
	bla (0.124347)
	pgl (0.118483)
	cty (0.10408)
	ldo (0.0970026)