Non-Coding RNA Search

Ss1.1-reli1117b_i19.5

Sequence:


               
               GAAGATGTTGGGGACGTGGCCTTCGTGAGGCATGTGACTGTGTTCGAAAACCTGCCTGAC
AAGGCTGACAGGGACCAGTACGAGCTGCTCTGCAAGGACAACACCAGGAGGCCTGTGGAT
GAGTACGAGAACTGCCACCTGGCACAGGTCCCTTCCCACGCCGTTGTGGCCCGGAGTGTG
GATGGCAAGGAGGACTTGATCTGGGAGCTTCTCAACCAGGCTCAGGAAAATTTTGGAAAA
GACAAGTCGGCAGAGTTCCAGCTCTTCAGCTCTTCTCATGGGAAGGATCTCCTGTTTACA
GACGCCTGCCTTGGGTTTTTAAGAGTCCCACCGAAAATGGACGCGAAGCTCTATCTGGGA
TATGAGTATTTTGCTGCCATTCAGCATCTAAGGAGAGTCCAAGGGACAGAAGAACCCCAG
AGGGTGATGTGGTGTGCAGTAGGCCAGCACGAGAGGACCAAGTGTGACAGCTGGAGTGTC
CTGAGCGGCGGCATCTTGAATTGCAACTCGGAGGACACCATGGAGGACTGCATCGCTGCC
ATCGCGAAAGGAGAGGCTGATGCTATGAGCTTGGATGGAGGCTTCCTCTACACAGCGGGC
AAGTGTGGTCTGGTGCCTGTCCTGGCAGAGAACTACTTGTCTCAAGATGGCAAAGAGCGG
TTTGGGTCTAAGTGTGTGAATACACCTATGGAAGGTTATTATGTCGTGGCCGTGGTCAAG
AAGTCAGATGCTGACCTCACCTGGAACTCCCTGAGAGGCAAGAAGTCCTGCCACACAGCT
GTTGGCACTTCCGCAGGCTGGATCATCCCCATGGGTTTCATATACAACCAAACCGGGTCC
TGTAAACTTGATGAGTTCTTCAGTCAAAGCTGTGCCCCTGGGTCTGATCCAGAGTCCCGT
CTCTGTGCTCTGTGCAGTGGCAGCATCAGTGGGCAGCCAGCCCACACCTGTGCCCCCAAC
AGCCACGAGGGGTACCACGGCTTCAGTGGGGCCCTCCGGTGCCTGGTTGAGAAGGGAGAC
GTGGCCTTTGTGAAGCACCCCACAGTCCTGCAGAACACCGACGGAAGGAACCCCGAGGCC
TGGGCAAAGGATCTGAAGCAGGAGGACTTCCAGCTGCTGTGCCCCGATGGTACCAGGAAG
CCTGTGACTGAGGCCCAGAGCTGTCACCTAGCAGCAGTCCCCAGTCATGCTGTGGTCTCA
AGGAAAGATAAGGCGGATTTTGTCCGCAGAATGCTCTTCAATCAACAGGAGCTTTTTGGA
AGAAATGGGTTTGAATACATGATGTTCCAGCTGTTCAAATCCTCGACCGAGGATCTGCTC
TTCAGCGATGACACAGAATGTTTGGCTAACCTTCAGGACAAAATAACTTATCAAAAATAC
TTAGGGCCAGAGTATCTTCAGGCTATTGCTAACGTGAGACAATGCTTCCCCTCCGAACTT
CTGGATGCCTGCACTTTCCATGGAAATTAAAAACTGATCAAAGTGGGCAACCACACAGAT
GCTCGGAGCCTGCAAGTACAGTGGGGCCACATTTTCCTTTGTCTGTGTGGTGGGTCTGGG
TTAACATCAGTTATAGTTATAATTGTGTACTGTAACTGATACAAAAATCACAATGAATAA
AAACTATTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGATGTTGGGGACGTGGCCTTCGTGAGGCATGTGACTGTGTTCGAAAACCTGCCTGAC
AAGGCTGACAGGGACCAGTACGAGCTGCTCTGCAAGGACAACACCAGGAGGCCTGTGGAT
GAGTACGAGAACTGCCACCTGGCACAGGTCCCTTCCCACGCCGTTGTGGCCCGGAGTGTG
GATGGCAAGGAGGACTTGATCTGGGAGCTTCTCAACCAGGCTCAGGAAAATTTTGGAAAA
GACAAGTCGGCAGAGTTCCAGCTCTTCAGCTCTTCTCATGGGAAGGATCTCCTGTTTACA
GACGCCTGCCTTGGGTTTTTAAGAGTCCCACCGAAAATGGACGCGAAGCTCTATCTGGGA
TATGAGTATTTTGCTGCCATTCAGCATCTAAGGAGAGTCCAAGGGACAGAAGAACCCCAG
AGGGTGATGTGGTGTGCAGTAGGCCAGCACGAGAGGACCAAGTGTGACAGCTGGAGTGTC
CTGAGCGGCGGCATCTTGAATTGCAACTCGGAGGACACCATGGAGGACTGCATCGCTGCC
ATCGCGAAAGGAGAGGCTGATGCTATGAGCTTGGATGGAGGCTTCCTCTACACAGCGGGC
AAGTGTGGTCTGGTGCCTGTCCTGGCAGAGAACTACTTGTCTCAAGATGGCAAAGAGCGG
TTTGGGTCTAAGTGTGTGAATACACCTATGGAAGGTTATTATGTCGTGGCCGTGGTCAAG
AAGTCAGATGCTGACCTCACCTGGAACTCCCTGAGAGGCAAGAAGTCCTGCCACACAGCT
GTTGGCACTTCCGCAGGCTGGATCATCCCCATGGGTTTCATATACAACCAAACCGGGTCC
TGTAAACTTGATGAGTTCTTCAGTCAAAGCTGTGCCCCTGGGTCTGATCCAGAGTCCCGT
CTCTGTGCTCTGTGCAGTGGCAGCATCAGTGGGCAGCCAGCCCACACCTGTGCCCCCAAC
AGCCACGAGGGGTACCACGGCTTCAGTGGGGCCCTCCGGTGCCTGGTTGAGAAGGGAGAC
GTGGCCTTTGTGAAGCACCCCACAGTCCTGCAGAACACCGACGGAAGGAACCCCGAGGCC
TGGGCAAAGGATCTGAAGCAGGAGGACTTCCAGCTGCTGTGCCCCGATGGTACCAGGAAG
CCTGTGACTGAGGCCCAGAGCTGTCACCTAGCAGCAGTCCCCAGTCATGCTGTGGTCTCA
AGGAAAGATAAGGCGGATTTTGTCCGCAGAATGCTCTTCAATCAACAGGAGCTTTTTGGA
AGAAATGGGTTTGAATACATGATGTTCCAGCTGTTCAAATCCTCGACCGAGGATCTGCTC
TTCAGCGATGACACAGAATGTTTGGCTAACCTTCAGGACAAAATAACTTATCAAAAATAC
TTAGGGCCAGAGTATCTTCAGGCTATTGCTAACGTGAGACAATGCTTCCCCTCCGAACTT
CTGGATGCCTGCACTTTCCATGGAAATTAAAAACTGATCAAAGTGGGCAACCACACAGAT
GCTCGGAGCCTGCAAGTACAGTGGGGCCACATTTTCCTTTGTCTGTGTGGTGGGTCTGGG
TTAACATCAGTTATAGTTATAATTGTGTACTGTAACTGATACAAAAATCACAATGAATAA
AAACTATTGTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|45478162|gb|AAS66252.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|45478162|gb|AAS66252.1|

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               46-226, gnl|bosTau2|chr1 (88722532-88722352)
               

               
               46-226, gnl|Hg17|chr3 (134900986-134901166)
               

               
               46-226, gnl|Mm7|chr9 (102986769-102986589)
               


               
               398-553, gnl|bosTau2|chr1 (88719405-88719249)
               

               
               398-553, gnl|Hg17|chr3 (134903474-134903629)
               

               
               398-553, gnl|Mm7|chr9 (102982563-102982408)
               


               
               689-856, gnl|bosTau2|chr1 (88713480-88713313)
               

               
               689-856, gnl|Hg17|chr3 (134911049-134911216)
               

               
               689-856, gnl|Mm7|chr9 (102977294-102977127)
               


               
               1063-1249, gnl|bosTau2|chr1 (88697160-88696974)
               

               
               1063-1249, gnl|Hg17|chr3 (46455976-46455790)
               

               
               1063-1249, gnl|Mm7|chr9 (102968928-102968742)
               


               
               1422-1632, gnl|bosTau2|chr1 (88694300-88694088)
               

               
               1422-1632, gnl|Hg17|chr3 (134980112-134980319)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-226, gnl|bosTau2|chr1 (88722532-88722352)
               

               
               46-226, gnl|Hg17|chr3 (134900986-134901166)
               

               
               46-226, gnl|Mm7|chr9 (102986769-102986589)
               


               
               398-553, gnl|bosTau2|chr1 (88719405-88719249)
               

               
               398-553, gnl|Hg17|chr3 (134903474-134903629)
               

               
               398-553, gnl|Mm7|chr9 (102982563-102982408)
               


               
               689-856, gnl|bosTau2|chr1 (88713480-88713313)
               

               
               689-856, gnl|Hg17|chr3 (134911049-134911216)
               

               
               689-856, gnl|Mm7|chr9 (102977294-102977127)
               


               
               1063-1249, gnl|bosTau2|chr1 (88697160-88696974)
               

               
               1063-1249, gnl|Hg17|chr3 (46455976-46455790)
               

               
               1063-1249, gnl|Mm7|chr9 (102968928-102968742)
               


               
               1422-1632, gnl|bosTau2|chr1 (88694300-88694088)
               

               
               1422-1632, gnl|Hg17|chr3 (134980112-134980319)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               lun (0.902935)
               

               
               eli (0.303628)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.902935)
               

               
               eli (0.303628)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               spc (0.113366)

	46-226, gnl\|bosTau2\|chr1 (88722532-88722352)
	46-226, gnl\|Hg17\|chr3 (134900986-134901166)
	46-226, gnl\|Mm7\|chr9 (102986769-102986589)

	398-553, gnl\|bosTau2\|chr1 (88719405-88719249)
	398-553, gnl\|Hg17\|chr3 (134903474-134903629)
	398-553, gnl\|Mm7\|chr9 (102982563-102982408)

	689-856, gnl\|bosTau2\|chr1 (88713480-88713313)
	689-856, gnl\|Hg17\|chr3 (134911049-134911216)
	689-856, gnl\|Mm7\|chr9 (102977294-102977127)

	1063-1249, gnl\|bosTau2\|chr1 (88697160-88696974)
	1063-1249, gnl\|Hg17\|chr3 (46455976-46455790)
	1063-1249, gnl\|Mm7\|chr9 (102968928-102968742)

	1422-1632, gnl\|bosTau2\|chr1 (88694300-88694088)
	1422-1632, gnl\|Hg17\|chr3 (134980112-134980319)

	lun (0.902935)
	eli (0.303628)
	sag (0.182715)
	ton (0.1755)
	spc (0.113366)