Non-Coding RNA Search

Ss1.1-reli1121b_e10.5

Sequence:


               
               GGATTCTTGCAGTGAATAGGAGTCAGGCTAATCTCTCGGAGAGCAGGTAGACGGAAGTAC
GTAGTAGCGTGGCTGTTTTCCGGCAGTGGACTTAGTTGGCCGCGCTAGTGACGCGTGGAT
GCGCGCGCCAGGAAGGCACGCGCAAGGCGGGAGCGACGGCAGGCAGCGCGGAGACGCCTG
AGCCCTCTTGACTCTTAATGTTGGTGTGATCAGCACTGGAAAAGATGCCAGCCCCAGCTG
CCACATATGAAAGAATAGTTTACAAAAATCCCTCTGAGCACCACTACATGAAAGTCCGGC
TAGAATTTCAAGATCGTGGGGTTGGACTGAATGCTGCACAGTTCAAACAGCTGCTTATTT
CAGCTCTGAAGGACCTGTTTGGGGAGGTTGATGCTGCCTTACCCTTGGACATTCTGACCT
ACGAAGAGAAGAGCTTGTCAGCCATCTTGAGAATATGTAGCAGTGGTCTTGTCAAATTGT
GGAGCTCTTTGACTCTGTTGGGATCCTATAAAGGCAAGAAATGTGCTTTCAGAGTGATTC
AGGTTTCTCCATTTCTCCTGGCATTATCTGGTAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTCTTGCAGTGAATAGGAGTCAGGCTAATCTCTCGGAGAGCAGGTAGACGGAAGTAC
GTAGTAGCGTGGCTGTTTTCCGGCAGTGGACTTAGTTGGCCGCGCTAGTGACGCGTGGAT
GCGCGCGCCAGGAAGGCACGCGCAAGGCGGGAGCGACGGCAGGCAGCGCGGAGACGCCTG
AGCCCTCTTGACTCTTAATGTTGGTGTGATCAGCACTGGAAAAGATGCCAGCCCCAGCTG
CCACATATGAAAGAATAGTTTACAAAAATCCCTCTGAGCACCACTACATGAAAGTCCGGC
TAGAATTTCAAGATCGTGGGGTTGGACTGAATGCTGCACAGTTCAAACAGCTGCTTATTT
CAGCTCTGAAGGACCTGTTTGGGGAGGTTGATGCTGCCTTACCCTTGGACATTCTGACCT
ACGAAGAGAAGAGCTTGTCAGCCATCTTGAGAATATGTAGCAGTGGTCTTGTCAAATTGT
GGAGCTCTTTGACTCTGTTGGGATCCTATAAAGGCAAGAAATGTGCTTTCAGAGTGATTC
AGGTTTCTCCATTTCTCCTGGCATTATCTGGTAATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55728476|emb|CAH90981.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55728476|emb|CAH90981.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               18-179, gnl|bosTau2|chr22 (31966128-31966288)
               


               
               181-309, gnl|bosTau2|chr22 (31968986-31969113)
               

               
               181-309, gnl|Hg17|chr3 (58271055-58271181)
               

               
               181-309, gnl|Mm7|chr14 (5893762-5893875)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-179, gnl|bosTau2|chr22 (31966128-31966288)
               


               
               181-309, gnl|bosTau2|chr22 (31968986-31969113)
               

               
               181-309, gnl|Hg17|chr3 (58271055-58271181)
               

               
               181-309, gnl|Mm7|chr14 (5893762-5893875)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eli (0.151814)
               

               
               fat (0.147427)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)
               

               
               fat (0.147427)

	18-179, gnl\|bosTau2\|chr22 (31966128-31966288)

	181-309, gnl\|bosTau2\|chr22 (31968986-31969113)
	181-309, gnl\|Hg17\|chr3 (58271055-58271181)
	181-309, gnl\|Mm7\|chr14 (5893762-5893875)