Non-Coding RNA Search

Ss1.1-reli1129b_o16.5

Sequence:


               
               GGTAGGTATGCCATTCCCTCAATTGGCTGCGACGCCTGCGTGTGTTTACCAGAGAGGGAG
GGACCAGCTGGGGAGAGCAGAGATAGGCCCAGGGGCAGCCCGGGGTGACCAGCACTGCCG
GGGGGTGGGGGGTGGTCAGCCAATGTGGATGGAGGTTGAGCACCCCCTACGGCTGCCCCT
GCCCTGAGCTGCCTCAGGCCCACCAGGCTCCAGCCGGCCCTGTCACCTCAGTCTCCCTGC
TGGTCCTTGGAGGTACCAACACTGCCAGAACTCCCCTTCCTTCCTTTCCCCGCTGCCCCT
CTGCCCGGGGGGTGTCTCAGGGACTGAGGGGGTGGGGGGGACATGAGTTCCCAAAGGCTC
TTTTGTAAAGTTTTTGTAGTGATTTTTATGCCACCTGAATAAAGAATGAATGGGCCTGTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAGGTATGCCATTCCCTCAATTGGCTGCGACGCCTGCGTGTGTTTACCAGAGAGGGAG
GGACCAGCTGGGGAGAGCAGAGATAGGCCCAGGGGCAGCCCGGGGTGACCAGCACTGCCG
GGGGGTGGGGGGTGGTCAGCCAATGTGGATGGAGGTTGAGCACCCCCTACGGCTGCCCCT
GCCCTGAGCTGCCTCAGGCCCACCAGGCTCCAGCCGGCCCTGTCACCTCAGTCTCCCTGC
TGGTCCTTGGAGGTACCAACACTGCCAGAACTCCCCTTCCTTCCTTTCCCCGCTGCCCCT
CTGCCCGGGGGGTGTCTCAGGGACTGAGGGGGTGGGGGGGACATGAGTTCCCAAAGGCTC
TTTTGTAAAGTTTTTGTAGTGATTTTTATGCCACCTGAATAAAGAATGAATGGGCCTGTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               229-343, - strand, RNAz p=0.88266

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-343, - strand, RNAz p=0.88266

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               301-390, + strand, RNAmicro p=0.996522

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               301-390, + strand, RNAmicro p=0.996522

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               147-420, gnl|bosTau2|chr19 (17377068-17377337)
               

               
               147-420, gnl|Hg17|chr17 (1605009-1605314)
               

               
               147-420, gnl|Mm7|chr11 (75513570-75513305)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               147-420, gnl|bosTau2|chr19 (17377068-17377337)
               

               
               147-420, gnl|Hg17|chr17 (1605009-1605314)
               

               
               147-420, gnl|Mm7|chr11 (75513570-75513305)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fli (0.405762)
               

               
               eli (0.151814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.405762)
               

               
               eli (0.151814)

	147-420, gnl\|bosTau2\|chr19 (17377068-17377337)
	147-420, gnl\|Hg17\|chr17 (1605009-1605314)
	147-420, gnl\|Mm7\|chr11 (75513570-75513305)