Ss1.1-reli1130b_i23.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CCCCCTCTCTGTGCTCATCCAGCCTTGACTATTTGGCCTCCAGCAGCAGAGCAACTTCCC AGAATGCAGTGGGCTGCTAGAGAATTCTGGCACCCCTCTCATGACTGGGGGATTCTGTAA ATAAAGGCGCCCCTGGGGTTGGGGCAACAGTGAGGAGCTGTGGGATGAGCCCAGGATGGG AAGCCACTGAATCTGGCCCTGGGTTCTAGTCCCAGTTTTGCCACTGATTTCTGGGTGACC TTGGGCATATGGTTTTCTCTCTCTGGGTCTGGTCATCTCTCAAATAGAAAAGTGAAACCT CCTCGTAGACCTCACCACAGGATTTATCTGCTGTCATGCTCAAATGAAATGTCGAAGAAG GTGCTTCCTCTAGAGATGGTGCTAAACAAAGGGCTGTCCTGTAATGACTTCTGATACCCA CAGGGCTGGTGGGCATGCTGTCCACTGTGTGGTGCTGGGGGCTGCACAATGCCAGAGCCA GGGGACCAGGATAACACGGCTCTTTGTTCCAATAGCTGGTTCTGCTACCTCCCAGGCACT CTGCAGCGCAATGCAGCCCCCCGCCCCTACACTCCCCATCCTCCAACCCACTGTCTAGGC CTCATGCCTAAAGAAGAGTTGAAGGCATGGGAGCCACCATTTTATTGGAGAAGCCCAAAT AAACACAAGTTT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CCCCCTCTCTGTGCTCATCCAGCCTTGACTATTTGGCCTCCAGCAGCAGAGCAACTTCCC AGAATGCAGTGGGCTGCTAGAGAATTCTGGCACCCCTCTCATGACTGGGGGATTCTGTAA ATAAAGGCGCCCCTGGGGTTGGGGCAACAGTGAGGAGCTGTGGGATGAGCCCAGGATGGG AAGCCACTGAATCTGGCCCTGGGTTCTAGTCCCAGTTTTGCCACTGATTTCTGGGTGACC TTGGGCATATGGTTTTCTCTCTCTGGGTCTGGTCATCTCTCAAATAGAAAAGTGAAACCT CCTCGTAGACCTCACCACAGGATTTATCTGCTGTCATGCTCAAATGAAATGTCGAAGAAG GTGCTTCCTCTAGAGATGGTGCTAAACAAAGGGCTGTCCTGTAATGACTTCTGATACCCA CAGGGCTGGTGGGCATGCTGTCCACTGTGTGGTGCTGGGGGCTGCACAATGCCAGAGCCA GGGGACCAGGATAACACGGCTCTTTGTTCCAATAGCTGGTTCTGCTACCTCCCAGGCACT CTGCAGCGCAATGCAGCCCCCCGCCCCTACACTCCCCATCCTCCAACCCACTGTCTAGGC CTCATGCCTAAAGAAGAGTTGAAGGCATGGGAGCCACCATTTTATTGGAGAAGCCCAAAT AAACACAAGTTT |
Predicted RNA structure(s): 5 entry(ies) | More info |
Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
26-122, - strand, RNAz p=0.856776 | |
44-144, + strand, RNAz p=0.989759 | |
415-522, - strand, RNAz p=0.614167 | |
441-672, + strand, RNAz p=0.996874 | |
541-672, - strand, RNAz p=0.931593 |
Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
26-122, - strand, RNAz p=0.856776 | |
44-144, + strand, RNAz p=0.989759 | |
415-522, - strand, RNAz p=0.614167 | |
441-672, + strand, RNAz p=0.996874 | |
541-672, - strand, RNAz p=0.931593 |
Predicted microRNA(s): 2 entry(ies) | More info |
Predicted microRNA(s): 2 entry(ies) | Help | Less info |
36-138, + strand, RNAmicro p=0.998971 | |
539-707, - strand, RNAmicro p=0.986672 |
Predicted microRNA(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
36-138, + strand, RNAmicro p=0.998971 | |
539-707, - strand, RNAmicro p=0.986672 |
Homologous human UTR: 2 entry(ies) | More info |
Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
3' of BC033805, + | |
3' of NM_006672, + |
Aligned organism(s): 25 entry(ies) | More info |
Aligned organism(s): 25 entry(ies) | Help | Less info |
5-144, gnl|bosTau2|chr23 (17166614-17166753) | |
5-144, gnl|canFam2|chr12 (14791311-14792020) | |
5-144, gnl|dasNov1|scaffold_29976 (81345-82082) | |
5-144, gnl|echTel1|scaffold_314644 (119879-119256) | |
5-144, gnl|hg17|chr6 (43380444-43381163) | |
5-144, gnl|Hg17|chr6 (43380571-43380721) | |
5-144, gnl|loxAfr1|scaffold_16860 (19971-20694) | |
5-144, gnl|mm7|chr17 (44560600-44560070) | |
5-144, gnl|Mm7|chr17 (44560506-44560351) | |
5-144, gnl|oryCun1|scaffold_179605 (3459-4107) | |
5-144, gnl|panTro1|chr5 (43979316-43980035) | |
5-144, gnl|rheMac2|chr4 (43200735-43201453) | |
5-144, gnl|rn3|chr9 (9937429-9937979) | |
154-672, gnl|bosTau2|chr23 (17166744-17167249) | |
154-672, gnl|canFam2|chr12 (14791311-14792020) | |
154-672, gnl|dasNov1|scaffold_29976 (81345-82082) | |
154-672, gnl|echTel1|scaffold_314644 (119879-119256) | |
154-672, gnl|hg17|chr6 (43380444-43381163) | |
154-672, gnl|Hg17|chr6 (43380693-43381246) | |
154-672, gnl|loxAfr1|scaffold_16860 (19971-20694) | |
154-672, gnl|mm7|chr17 (44560600-44560070) | |
154-672, gnl|oryCun1|scaffold_179605 (3459-4107) | |
154-672, gnl|panTro1|chr5 (43979316-43980035) | |
154-672, gnl|rheMac2|chr4 (43200735-43201453) | |
154-672, gnl|rn3|chr9 (9937429-9937979) |
Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
5-144, gnl|bosTau2|chr23 (17166614-17166753) | |
5-144, gnl|canFam2|chr12 (14791311-14792020) | |
5-144, gnl|dasNov1|scaffold_29976 (81345-82082) | |
5-144, gnl|echTel1|scaffold_314644 (119879-119256) | |
5-144, gnl|hg17|chr6 (43380444-43381163) | |
5-144, gnl|Hg17|chr6 (43380571-43380721) | |
5-144, gnl|loxAfr1|scaffold_16860 (19971-20694) | |
5-144, gnl|mm7|chr17 (44560600-44560070) | |
5-144, gnl|Mm7|chr17 (44560506-44560351) | |
5-144, gnl|oryCun1|scaffold_179605 (3459-4107) | |
5-144, gnl|panTro1|chr5 (43979316-43980035) | |
5-144, gnl|rheMac2|chr4 (43200735-43201453) | |
5-144, gnl|rn3|chr9 (9937429-9937979) | |
154-672, gnl|bosTau2|chr23 (17166744-17167249) | |
154-672, gnl|canFam2|chr12 (14791311-14792020) | |
154-672, gnl|dasNov1|scaffold_29976 (81345-82082) | |
154-672, gnl|echTel1|scaffold_314644 (119879-119256) | |
154-672, gnl|hg17|chr6 (43380444-43381163) | |
154-672, gnl|Hg17|chr6 (43380693-43381246) | |
154-672, gnl|loxAfr1|scaffold_16860 (19971-20694) | |
154-672, gnl|mm7|chr17 (44560600-44560070) | |
154-672, gnl|oryCun1|scaffold_179605 (3459-4107) | |
154-672, gnl|panTro1|chr5 (43979316-43980035) | |
154-672, gnl|rheMac2|chr4 (43200735-43201453) | |
154-672, gnl|rn3|chr9 (9937429-9937979) |
Expressed library(ies): 3 entry(ies) | More info |
Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
eli (0.759071) | |
cli (0.458435) | |
fli (0.405762) |