Non-Coding RNA Search

Ss1.1-reli1131b_o7.5

Sequence:


               
               TATTGATGGCCTGGAAACTCGGATGTCAGCCTGCACTGCCCAAAACCAGGAGCTTCAGAG
GAAAGTCTTACATCTTGAGAAGCAGAACCTGTCCCTCTTGGAGCAGCTGAAGAAACTCCA
GGCCATTGTGGTCCAGTCTACCAGCAAGTCAGCTCAGACGGGCACCTGCATAGCGGTCCT
GCTCTTCTCCTTTGCTCTCATCGTCCTCCCCTCCATCAGCCCTTTCGCTTCCAACAAAAC
CGAGAACCCTGGAGACTTCACACCTGTGCGAGTTTTCTCCAGAACTTTGCACAACGACGC
CGCATCTCGTGTGGCCCCCAATACCGCACCAGGCTCCGAGGCTCCAGGACCCAGACCCGA
GGCTGGTACACTTCAGGAAGGGTCTCCAGGCAGCCCTGGAGGGGACCAGGGATCCAGGGA
CAGACCAGCTCTAGACAACTCGACGGAGAATCTGGACAACTCAACTCTGGTCCAGGAAAA
CTCCCTGAAGGAGACAGACCAGGCCACCCTGCTAGACTGTGCCCCGCCTGAGCCAGCACT
CAGCCCAGGGCGTGTGGGGTTGGAGGCAGCAGGGGGGGAGCTGTGAGTACCACAGATACG
TGCCCCCAGGCCCCTCTGCTCAGCGGTGCTTCAGGGGGTGCTGTGGTGGACAGAGATGGG
CACAGGGATCCAAGGTGAGGGAGAGACCTTGGCGGAGATATCAGGATAGAGATGCACAGA
CTCAAAGCTACAGACTTGGGGACCCAGGCACATGCAGAAACTGATGCTCATTCACAGACC
ATAGTGCCCACAAGCCTGAGAAATACACACACAGATGCAGGTGCAGAAGGAAACAGGAAC
ACACAGACTGATCCACAGACCCAGCCAGACAGATGTATACACCAGGCCTCAGTAACTCCC
TGCCCCGGGACTCTTCTCTGTCCCCTCCCGCACAGGGAGGAAAAAGTTGCCGAGACTGCA
GGGCCGCCTGAGCACCGGCTAAGCTCTGAACTGGGCAGGCCATGGCCCATAGCCATTCCC
GTTTTTCTAAGACCGATGTGACCCTTAATAAAGTATTTTGACAGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTGATGGCCTGGAAACTCGGATGTCAGCCTGCACTGCCCAAAACCAGGAGCTTCAGAG
GAAAGTCTTACATCTTGAGAAGCAGAACCTGTCCCTCTTGGAGCAGCTGAAGAAACTCCA
GGCCATTGTGGTCCAGTCTACCAGCAAGTCAGCTCAGACGGGCACCTGCATAGCGGTCCT
GCTCTTCTCCTTTGCTCTCATCGTCCTCCCCTCCATCAGCCCTTTCGCTTCCAACAAAAC
CGAGAACCCTGGAGACTTCACACCTGTGCGAGTTTTCTCCAGAACTTTGCACAACGACGC
CGCATCTCGTGTGGCCCCCAATACCGCACCAGGCTCCGAGGCTCCAGGACCCAGACCCGA
GGCTGGTACACTTCAGGAAGGGTCTCCAGGCAGCCCTGGAGGGGACCAGGGATCCAGGGA
CAGACCAGCTCTAGACAACTCGACGGAGAATCTGGACAACTCAACTCTGGTCCAGGAAAA
CTCCCTGAAGGAGACAGACCAGGCCACCCTGCTAGACTGTGCCCCGCCTGAGCCAGCACT
CAGCCCAGGGCGTGTGGGGTTGGAGGCAGCAGGGGGGGAGCTGTGAGTACCACAGATACG
TGCCCCCAGGCCCCTCTGCTCAGCGGTGCTTCAGGGGGTGCTGTGGTGGACAGAGATGGG
CACAGGGATCCAAGGTGAGGGAGAGACCTTGGCGGAGATATCAGGATAGAGATGCACAGA
CTCAAAGCTACAGACTTGGGGACCCAGGCACATGCAGAAACTGATGCTCATTCACAGACC
ATAGTGCCCACAAGCCTGAGAAATACACACACAGATGCAGGTGCAGAAGGAAACAGGAAC
ACACAGACTGATCCACAGACCCAGCCAGACAGATGTATACACCAGGCCTCAGTAACTCCC
TGCCCCGGGACTCTTCTCTGTCCCCTCCCGCACAGGGAGGAAAAAGTTGCCGAGACTGCA
GGGCCGCCTGAGCACCGGCTAAGCTCTGAACTGGGCAGGCCATGGCCCATAGCCATTCCC
GTTTTTCTAAGACCGATGTGACCCTTAATAAAGTATTTTGACAGAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61842669|ref|XP_590624.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842669|ref|XP_590624.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               459-578, + strand, RNAz p=0.967021
               

               
               876-967, - strand, RNAz p=0.995199

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               459-578, + strand, RNAz p=0.967021
               

               
               876-967, - strand, RNAz p=0.995199

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               259-1066, gnl|bosTau2|chr7 (15441311-15440475)
               

               
               259-1066, gnl|Hg17|chr19 (4122641-4124051)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               259-1066, gnl|bosTau2|chr7 (15441311-15440475)
               

               
               259-1066, gnl|Hg17|chr19 (4122641-4124051)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               jej (0.395687)
               

               
               eli (0.303628)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               nbm (0.0993246)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.395687)
               

               
               eli (0.303628)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               nbm (0.0993246)

	459-578, + strand, RNAz p=0.967021
	876-967, - strand, RNAz p=0.995199

	259-1066, gnl\|bosTau2\|chr7 (15441311-15440475)
	259-1066, gnl\|Hg17\|chr19 (4122641-4124051)

	jej (0.395687)
	eli (0.303628)
	fty (0.17584)
	nje (0.16592)
	cli (0.152812)
	nbm (0.0993246)