Non-Coding RNA Search

Ss1.1-reli1136b_n20.5

Sequence:


               
               CGGTTCCCGCCAATTCTCGTGCTAATCCTGCCTGGGTTGAGTTCTGCGTTTCATGGAGAC
GTTTGACCCTACCGAGCTGCCCGAGCTGCTTAAGCTTTATTACCGGAGGCTCTTTCCCTA
CGCCCAGTACTATCGCTGGCTGAACTATGGCGGAGTGGTAAAGAATTACTTTCAACACCG
TGAATTTTCATTCACGTTGAAAGATGACATTTACATTCGCTACCAATCTTTCAACAACCA
GAGTGAGCTGGAAAAGGAGATGCAGAAAATGAATCCATACAAGATTGATATAGGCGCGGT
ATATTCCCACAGACCCAATCAGCACAATACAGTGAAGCTGGGAGCTTTCCAGGCTCAGGA
AAAAGAGCTGGTCTTTGACATTGACATGACAGACTATGATGATGTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTTCCCGCCAATTCTCGTGCTAATCCTGCCTGGGTTGAGTTCTGCGTTTCATGGAGAC
GTTTGACCCTACCGAGCTGCCCGAGCTGCTTAAGCTTTATTACCGGAGGCTCTTTCCCTA
CGCCCAGTACTATCGCTGGCTGAACTATGGCGGAGTGGTAAAGAATTACTTTCAACACCG
TGAATTTTCATTCACGTTGAAAGATGACATTTACATTCGCTACCAATCTTTCAACAACCA
GAGTGAGCTGGAAAAGGAGATGCAGAAAATGAATCCATACAAGATTGATATAGGCGCGGT
ATATTCCCACAGACCCAATCAGCACAATACAGTGAAGCTGGGAGCTTTCCAGGCTCAGGA
AAAAGAGCTGGTCTTTGACATTGACATGACAGACTATGATGATGTGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61844331|ref|XP_582662.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61844331|ref|XP_582662.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               154-272, - strand, RNAz p=0.997746

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-272, - strand, RNAz p=0.997746

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               154-313, gnl|bosTau2|chr5 (33023597-33023756)
               

               
               154-313, gnl|Hg17|chr12 (55431248-55431089)
               

               
               154-313, gnl|Mm7|chr10 (127517350-127517509)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               154-313, gnl|bosTau2|chr5 (33023597-33023756)
               

               
               154-313, gnl|Hg17|chr12 (55431248-55431089)
               

               
               154-313, gnl|Mm7|chr10 (127517350-127517509)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mas (0.210305)
               

               
               tes (0.207814)
               

               
               eli (0.151814)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               eli (0.151814)

	154-313, gnl\|bosTau2\|chr5 (33023597-33023756)
	154-313, gnl\|Hg17\|chr12 (55431248-55431089)
	154-313, gnl\|Mm7\|chr10 (127517350-127517509)