Ss1.1-reli1137b_k16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCACTGTCATGTTCTCTATTATATCCATGGACTTCTTCCAACTGGAGGCCGCCCAGGC CAGCTACCTCATGTCCTTCTTCGGGGTCCTCCAGATGGTCATCCAGGGCCTGGTCATCGG GCGGCTGAGCAGCCACTTCTCCGAGGGAGCCCTGCTCCGGGCCAGCGTGCTGGTCTTCAG CCTGGTGGGATTGGCCATGGCACTGATGACCCATGTCTTCCACTTCTGCCTCCTGATGCC CGGCCTGGTCTTCAGCCTGTGTACCCTCAACGTGGTCACCGACAGCCTGCTGACCAAGGC CGTGTCGGCCTCAGACACCGGGACCATGTTGGGCCTCTGTGCCTCCGTGCAGCCGCTGAT GCGAACGCTAGGGCCCACCCTGGGCGGCCTCCTGTACCGCAGCTTTGGAGTCCCTGCCTT TGGCCACGTGCAGTTTGCGGTCAACTTCCTTCTCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCACTGTCATGTTCTCTATTATATCCATGGACTTCTTCCAACTGGAGGCCGCCCAGGC CAGCTACCTCATGTCCTTCTTCGGGGTCCTCCAGATGGTCATCCAGGGCCTGGTCATCGG GCGGCTGAGCAGCCACTTCTCCGAGGGAGCCCTGCTCCGGGCCAGCGTGCTGGTCTTCAG CCTGGTGGGATTGGCCATGGCACTGATGACCCATGTCTTCCACTTCTGCCTCCTGATGCC CGGCCTGGTCTTCAGCCTGTGTACCCTCAACGTGGTCACCGACAGCCTGCTGACCAAGGC CGTGTCGGCCTCAGACACCGGGACCATGTTGGGCCTCTGTGCCTCCGTGCAGCCGCTGAT GCGAACGCTAGGGCCCACCCTGGGCGGCCTCCTGTACCGCAGCTTTGGAGTCCCTGCCTT TGGCCACGTGCAGTTTGCGGTCAACTTCCTTCTCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-133, + strand, RNAz p=0.766883 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-133, + strand, RNAz p=0.766883 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-147, gnl|bosTau2|chr29 (43748494-43748641) | |
| 1-147, gnl|canFam2|chr18 (49915370-49915496) | |
| 1-147, gnl|fr1|chrUn (316614771-316614896) | |
| 1-147, gnl|hg17|chr11 (2897095-2897223) | |
| 1-147, gnl|Hg17|chr11 (2897117-2897254) | |
| 1-147, gnl|loxAfr1|scaffold_142851 (249-377) | |
| 1-147, gnl|mm7|chr7 (139920105-139920232) | |
| 1-147, gnl|monDom2|scaffold_153 (1408-1536) | |
| 1-147, gnl|panTro1|chr9 (3082487-3082615) | |
| 1-147, gnl|rn3|chr1 (204023266-204023392) | |
| 194-321, gnl|bosTau2|chr29 (43753078-43753204) | |
| 194-321, gnl|canFam2|chr18 (49919306-49919436) | |
| 194-321, gnl|dasNov1|scaffold_219349 (495-626) | |
| 194-321, gnl|fr1|chrUn (316615536-316615666) | |
| 194-321, gnl|galGal2|chr5 (10711990-10711860) | |
| 194-321, gnl|hg17|chr11 (2900238-2900368) | |
| 194-321, gnl|Hg17|chr11 (2900239-2900363) | |
| 194-321, gnl|mm7|chr7 (139924586-139924716) | |
| 194-321, gnl|Mm7|chr7 (139924585-139924711) | |
| 194-321, gnl|monDom2|scaffold_153 (10308-10440) | |
| 194-321, gnl|panTro1|chr9 (3085411-3085541) | |
| 194-321, gnl|rn3|chr1 (204027642-204027772) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-147, gnl|bosTau2|chr29 (43748494-43748641) | |
| 1-147, gnl|canFam2|chr18 (49915370-49915496) | |
| 1-147, gnl|fr1|chrUn (316614771-316614896) | |
| 1-147, gnl|hg17|chr11 (2897095-2897223) | |
| 1-147, gnl|Hg17|chr11 (2897117-2897254) | |
| 1-147, gnl|loxAfr1|scaffold_142851 (249-377) | |
| 1-147, gnl|mm7|chr7 (139920105-139920232) | |
| 1-147, gnl|monDom2|scaffold_153 (1408-1536) | |
| 1-147, gnl|panTro1|chr9 (3082487-3082615) | |
| 1-147, gnl|rn3|chr1 (204023266-204023392) | |
| 194-321, gnl|bosTau2|chr29 (43753078-43753204) | |
| 194-321, gnl|canFam2|chr18 (49919306-49919436) | |
| 194-321, gnl|dasNov1|scaffold_219349 (495-626) | |
| 194-321, gnl|fr1|chrUn (316615536-316615666) | |
| 194-321, gnl|galGal2|chr5 (10711990-10711860) | |
| 194-321, gnl|hg17|chr11 (2900238-2900368) | |
| 194-321, gnl|Hg17|chr11 (2900239-2900363) | |
| 194-321, gnl|mm7|chr7 (139924586-139924716) | |
| 194-321, gnl|Mm7|chr7 (139924585-139924711) | |
| 194-321, gnl|monDom2|scaffold_153 (10308-10440) | |
| 194-321, gnl|panTro1|chr9 (3085411-3085541) | |
| 194-321, gnl|rn3|chr1 (204027642-204027772) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.390016) | |
| eli (0.303628) |