Ss1.1-reli1138b_e24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGAAGCTCATCCAGAAGAAGCTGCTGGACAAGATATGTGACCAGGTGATGGAGTTCTCC TGGAGCGCCCTGTGGAACATCACGGACGAGACGCCCGACAACTGCGAGATGTTCCTCAAC TTCAATGGCATGAAGCTCTTCCTGGACTGCCTGAAGGAGTTCCCAGAGAAGCAGGAACTG CATCGGAATATGCTGGGACTCTTGGGGAACGTAGCCGAGGTGAAGGAGCTACGGCCCCAG CTGATGACTTCCCAGTTCATCAGTGTCTTTAGCAACCTCCTCGAGAGCAAGGCCGATGGG ATTGAGGTTTCCTACAACGCCTGTGGCGTCCTCTCCCACATCATGTTTGATGGGCCTGAG GCCTGGGGCATCTGTGAGCCCCAGCGGGAGGAGGTGGAGGAGCGCATGTGGGCAGCCATC CAGAGCTGGGACATCAACTCCCGGAGAAATATCAATTACAGGTGAGGGCTGGGGCAGGGT GGGGCAGGGCAGGGGCCGCACGCGTGCCCATTCCAACCAGGTCTGCTCAGAGCTGCGTGC CCTTCTCCCGGTCCTGCTACTCGGAGTGTAGCCCACCACCAGCAGAGCGCGGAAAGGCAC ACATCACACCTCTACAGCACCGTGCCCCGTTCACACATCCAAACCTGCATGGGCCCAGAG CCTACAGTTTACAAACATTTGATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGAAGCTCATCCAGAAGAAGCTGCTGGACAAGATATGTGACCAGGTGATGGAGTTCTCC TGGAGCGCCCTGTGGAACATCACGGACGAGACGCCCGACAACTGCGAGATGTTCCTCAAC TTCAATGGCATGAAGCTCTTCCTGGACTGCCTGAAGGAGTTCCCAGAGAAGCAGGAACTG CATCGGAATATGCTGGGACTCTTGGGGAACGTAGCCGAGGTGAAGGAGCTACGGCCCCAG CTGATGACTTCCCAGTTCATCAGTGTCTTTAGCAACCTCCTCGAGAGCAAGGCCGATGGG ATTGAGGTTTCCTACAACGCCTGTGGCGTCCTCTCCCACATCATGTTTGATGGGCCTGAG GCCTGGGGCATCTGTGAGCCCCAGCGGGAGGAGGTGGAGGAGCGCATGTGGGCAGCCATC CAGAGCTGGGACATCAACTCCCGGAGAAATATCAATTACAGGTGAGGGCTGGGGCAGGGT GGGGCAGGGCAGGGGCCGCACGCGTGCCCATTCCAACCAGGTCTGCTCAGAGCTGCGTGC CCTTCTCCCGGTCCTGCTACTCGGAGTGTAGCCCACCACCAGCAGAGCGCGGAAAGGCAC ACATCACACCTCTACAGCACCGTGCCCCGTTCACACATCCAAACCTGCATGGGCCCAGAG CCTACAGTTTACAAACATTTGATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 270-389, + strand, RNAz p=0.574921 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 270-389, + strand, RNAz p=0.574921 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 37-157, gnl|bosTau2|chr11 (78532624-78532504) | |
| 37-157, gnl|canFam2|chr9 (58209098-58208951) | |
| 37-157, gnl|danRer3|chrNA (173065847-173066002) | |
| 37-157, gnl|dasNov1|scaffold_8128 (7217-7070) | |
| 37-157, gnl|echTel1|scaffold_158591 (2058-1919) | |
| 37-157, gnl|fr1|chrUn (235816699-235816551) | |
| 37-157, gnl|galGal2|chr17 (5498940-5498815) | |
| 37-157, gnl|hg17|chr9 (128583344-128583491) | |
| 37-157, gnl|Hg17|chr9 (128583487-128583367) | |
| 37-157, gnl|loxAfr1|scaffold_61493 (535-388) | |
| 37-157, gnl|mm7|chr2 (30110612-30110751) | |
| 37-157, gnl|Mm7|chr2 (30110747-30110627) | |
| 37-157, gnl|monDom2|scaffold_51 (3308562-3308686) | |
| 37-157, gnl|oryCun1|scaffold_62 (3011-2865) | |
| 37-157, gnl|panTro1|chr11 (113421489-113421636) | |
| 37-157, gnl|rheMac2|chr15 (10119187-10119040) | |
| 37-157, gnl|rn3|chr3 (9108713-9108857) | |
| 37-157, gnl|tetNig1|chrUn_random (86790404-86790251) | |
| 37-157, gnl|xenTro1|scaffold_82 (205967-205821) | |
| 270-546, gnl|bosTau2|chr11 (78530897-78530623) | |
| 270-546, gnl|Hg17|chr9 (128581955-128581660) | |
| 270-546, gnl|Mm7|chr2 (30109267-30108998) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 37-157, gnl|bosTau2|chr11 (78532624-78532504) | |
| 37-157, gnl|canFam2|chr9 (58209098-58208951) | |
| 37-157, gnl|danRer3|chrNA (173065847-173066002) | |
| 37-157, gnl|dasNov1|scaffold_8128 (7217-7070) | |
| 37-157, gnl|echTel1|scaffold_158591 (2058-1919) | |
| 37-157, gnl|fr1|chrUn (235816699-235816551) | |
| 37-157, gnl|galGal2|chr17 (5498940-5498815) | |
| 37-157, gnl|hg17|chr9 (128583344-128583491) | |
| 37-157, gnl|Hg17|chr9 (128583487-128583367) | |
| 37-157, gnl|loxAfr1|scaffold_61493 (535-388) | |
| 37-157, gnl|mm7|chr2 (30110612-30110751) | |
| 37-157, gnl|Mm7|chr2 (30110747-30110627) | |
| 37-157, gnl|monDom2|scaffold_51 (3308562-3308686) | |
| 37-157, gnl|oryCun1|scaffold_62 (3011-2865) | |
| 37-157, gnl|panTro1|chr11 (113421489-113421636) | |
| 37-157, gnl|rheMac2|chr15 (10119187-10119040) | |
| 37-157, gnl|rn3|chr3 (9108713-9108857) | |
| 37-157, gnl|tetNig1|chrUn_random (86790404-86790251) | |
| 37-157, gnl|xenTro1|scaffold_82 (205967-205821) | |
| 270-546, gnl|bosTau2|chr11 (78530897-78530623) | |
| 270-546, gnl|Hg17|chr9 (128581955-128581660) | |
| 270-546, gnl|Mm7|chr2 (30109267-30108998) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eli (0.151814) |