Non-Coding RNA Search

Ss1.1-reli1138b_n13.5

Sequence:


               
               GTGGGGCTGCTCTGCTCCTTCTAGAACTGTGAGTGGACAGTCACCTGCCAAGCCTGAGGA
GGGGGGCGTGGGGCAGGGGCCTCCCGGGAATGTGAGTTTGGAAGTCGTGCGTTATTAACT
GCCCTGGGCCGGTGTCTGTGCGCGCTGCTTCCTCCCCTGCAGGTTCGGACGGGAACAGCA
TGGATTCGGTGGACGGCTGCTGTGGCCCCCGGAAGCCCGACGGTTTCCAGAATGCCCAGG
CGGGCTCCAATCCCAAGAAGGTCGACCTCATCATCTGGGAGATCGAGGTGCCAAAGCACC
TCGTTGGTCGGCTGATTGGCAAGCAGGGACGGTATGTGAGTTTCCTGAAGCAGACGTCTG
GTGCCAAGATCTACATCTCCACCCTGCCTTACACCCAGAACATCCAGATCTGCCACATAG
AAGGTTCTCAGCATCACGTAGACAAGGCGCTGAACTTGATTGGGAAGAAGTTCAAGGAAC
TGAACCTCACCAACATCTATGCCCCCCCACTGCCCTCACTGGCACTGCCTTCTCTTCCAA
TGACTTCCTGGCTCATGCTCCCGGATGGCATCACCGTGGAGGTGATCGTGGTCAAACAGG
TCAATGCCGGGCACCTGTTTGTGCAGCAGCACACGCATCCCACCTTCCATGCTCTGCGCA
GCCTGGACCAGCAGATGTACCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGGGCTGCTCTGCTCCTTCTAGAACTGTGAGTGGACAGTCACCTGCCAAGCCTGAGGA
GGGGGGCGTGGGGCAGGGGCCTCCCGGGAATGTGAGTTTGGAAGTCGTGCGTTATTAACT
GCCCTGGGCCGGTGTCTGTGCGCGCTGCTTCCTCCCCTGCAGGTTCGGACGGGAACAGCA
TGGATTCGGTGGACGGCTGCTGTGGCCCCCGGAAGCCCGACGGTTTCCAGAATGCCCAGG
CGGGCTCCAATCCCAAGAAGGTCGACCTCATCATCTGGGAGATCGAGGTGCCAAAGCACC
TCGTTGGTCGGCTGATTGGCAAGCAGGGACGGTATGTGAGTTTCCTGAAGCAGACGTCTG
GTGCCAAGATCTACATCTCCACCCTGCCTTACACCCAGAACATCCAGATCTGCCACATAG
AAGGTTCTCAGCATCACGTAGACAAGGCGCTGAACTTGATTGGGAAGAAGTTCAAGGAAC
TGAACCTCACCAACATCTATGCCCCCCCACTGCCCTCACTGGCACTGCCTTCTCTTCCAA
TGACTTCCTGGCTCATGCTCCCGGATGGCATCACCGTGGAGGTGATCGTGGTCAAACAGG
TCAATGCCGGGCACCTGTTTGTGCAGCAGCACACGCATCCCACCTTCCATGCTCTGCGCA
GCCTGGACCAGCAGATGTACCTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61871738|ref|XP_610292.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61871738|ref|XP_610292.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-296, gnl|bosTau2|chr19 (3538396-3538688)
               

               
               2-296, gnl|Hg17|chr17 (52542217-52542518)
               

               
               2-296, gnl|Mm7|chr11 (88950501-88950208)
               


               
               551-684, gnl|bosTau2|chr19 (3542650-3542783)
               

               
               551-684, gnl|Hg17|chr17 (52546818-52546951)
               

               
               551-684, gnl|Mm7|chr11 (88946229-88946096)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-296, gnl|bosTau2|chr19 (3538396-3538688)
               

               
               2-296, gnl|Hg17|chr17 (52542217-52542518)
               

               
               2-296, gnl|Mm7|chr11 (88950501-88950208)
               


               
               551-684, gnl|bosTau2|chr19 (3542650-3542783)
               

               
               551-684, gnl|Hg17|chr17 (52546818-52546951)
               

               
               551-684, gnl|Mm7|chr11 (88946229-88946096)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               eli (0.151814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               eli (0.151814)

	2-296, gnl\|bosTau2\|chr19 (3538396-3538688)
	2-296, gnl\|Hg17\|chr17 (52542217-52542518)
	2-296, gnl\|Mm7\|chr11 (88950501-88950208)

	551-684, gnl\|bosTau2\|chr19 (3542650-3542783)
	551-684, gnl\|Hg17\|chr17 (52546818-52546951)
	551-684, gnl\|Mm7\|chr11 (88946229-88946096)