Non-Coding RNA Search

Ss1.1-reli1138b_p5.5

Sequence:


               
               CGACCACGGTGCTGCAGCGGCTGAATGAGCAGCGCCTCCGTGGCCTCTTCTGCGACGTGG
TCCTGGTGGCTGACGAGCAGCGCGTGCCGGCCCACCGCAACCTGCTGGCCGTGTGCAGCG
ACTACTTCAACTCCATGTTCACCCTGGGCATGCGCGAGGCCTTCCAGAAGGAGGTGGAGC
TGGTGGGCGCCTCCTACATCGGGCTCAAGGCCGTGGTGGACTTCCTGTATGGCGGCGAGC
TGGTGCTGGACGGCGGCAACATCGACTACATCCTGGAGACGGCCCACCTGCTGCAGATCT
GGACGGCGGTGGACTTCTGCTGCGAGTACCTGGAGCAGGAGGTGAGCGAGGACAACTACC
TGTACCTGCAGGAGCTGGCCTCCATCTACAGCCTCAAGCGGCTGGACGCCTTCATCGACG
GCTTCATCCTCAGCCGCTTCGGCACGCTGTCCTTCACGCCCGACTTCCTGCAGAGCATCT
CCATGCAGAAGCTGTGCCTCTACCTGGGCAGCAGTGACGTGCAGCGGGAGTGCGAGCACG
ACCTGCTGCAGGCCGCCCTGCAGTGGCTGACGCAGCAGCCCGAGCGCGAGGCGCACGCCT
TCGAGGTGCTGGAGAACATCCATTTCCCGCTCATCCCCAAGAACGACCTGCTGCACCGCG
TCAAGCCGGCCGTGTGCGCGCTGCTGCCGCGGGAGGCCAACTGCGAGGGCTTCATCGAGG
AGGCCGTGCGCTACCACAACAGCCTGGCGGCGCAGCCGGTCATGCAGACCAAGCGCACGG
CCCTGCGCACCAACCAGGAGCGCCTGCTCTTCGTGGGCGGCGAGGTCTCCGAGCGGTGTC
TGGAGCTCAGTGACGACACCTGCTACCTGGACGCCCAGAACGAGCAGTGGGTCAAGGAGA
CGCCCCTGCCGGCCCGGCGGAGCCACCACTGTGTCGCCGTGCTGGGGGGCTTCATCTTCA
TCGCGGGCGGCAGCTTCTCGCGGGACAACGGAGGGGATGCGGCGTCCAATCTTCTTTATA
GGTATGACCCCCGCTGTAAACAGTGGATCAAGGTGGCCTCCATGAACCAGCGCCGCGTGG
ATTTCTACCTTGCGTCCATTGAGGACATGCTGGTGGCCGTCGGTGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACCACGGTGCTGCAGCGGCTGAATGAGCAGCGCCTCCGTGGCCTCTTCTGCGACGTGG
TCCTGGTGGCTGACGAGCAGCGCGTGCCGGCCCACCGCAACCTGCTGGCCGTGTGCAGCG
ACTACTTCAACTCCATGTTCACCCTGGGCATGCGCGAGGCCTTCCAGAAGGAGGTGGAGC
TGGTGGGCGCCTCCTACATCGGGCTCAAGGCCGTGGTGGACTTCCTGTATGGCGGCGAGC
TGGTGCTGGACGGCGGCAACATCGACTACATCCTGGAGACGGCCCACCTGCTGCAGATCT
GGACGGCGGTGGACTTCTGCTGCGAGTACCTGGAGCAGGAGGTGAGCGAGGACAACTACC
TGTACCTGCAGGAGCTGGCCTCCATCTACAGCCTCAAGCGGCTGGACGCCTTCATCGACG
GCTTCATCCTCAGCCGCTTCGGCACGCTGTCCTTCACGCCCGACTTCCTGCAGAGCATCT
CCATGCAGAAGCTGTGCCTCTACCTGGGCAGCAGTGACGTGCAGCGGGAGTGCGAGCACG
ACCTGCTGCAGGCCGCCCTGCAGTGGCTGACGCAGCAGCCCGAGCGCGAGGCGCACGCCT
TCGAGGTGCTGGAGAACATCCATTTCCCGCTCATCCCCAAGAACGACCTGCTGCACCGCG
TCAAGCCGGCCGTGTGCGCGCTGCTGCCGCGGGAGGCCAACTGCGAGGGCTTCATCGAGG
AGGCCGTGCGCTACCACAACAGCCTGGCGGCGCAGCCGGTCATGCAGACCAAGCGCACGG
CCCTGCGCACCAACCAGGAGCGCCTGCTCTTCGTGGGCGGCGAGGTCTCCGAGCGGTGTC
TGGAGCTCAGTGACGACACCTGCTACCTGGACGCCCAGAACGAGCAGTGGGTCAAGGAGA
CGCCCCTGCCGGCCCGGCGGAGCCACCACTGTGTCGCCGTGCTGGGGGGCTTCATCTTCA
TCGCGGGCGGCAGCTTCTCGCGGGACAACGGAGGGGATGCGGCGTCCAATCTTCTTTATA
GGTATGACCCCCGCTGTAAACAGTGGATCAAGGTGGCCTCCATGAACCAGCGCCGCGTGG
ATTTCTACCTTGCGTCCATTGAGGACATGCTGGTGGCCGTCGGTGGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|31542246|ref|NP_079007.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31542246|ref|NP_079007.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               324-603, - strand, RNAz p=0.996052
               

               
               804-923, - strand, RNAz p=0.612074

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               324-603, - strand, RNAz p=0.996052
               

               
               804-923, - strand, RNAz p=0.612074

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-1055, gnl|bosTau2|chr18 (12043915-12042887)
               

               
               5-1055, gnl|Hg17|chr16 (83248004-83249054)
               

               
               5-1055, gnl|Mm7|chr8 (118505351-118506398)
               


               
               10-449, gnl|bosTau2|chr16 (34594086-34594528)
               

               
               10-449, gnl|Hg17|chr1 (6597082-6596640)
               

               
               10-449, gnl|Mm7|chr4 (150998546-150998988)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1055, gnl|bosTau2|chr18 (12043915-12042887)
               

               
               5-1055, gnl|Hg17|chr16 (83248004-83249054)
               

               
               5-1055, gnl|Mm7|chr8 (118505351-118506398)
               


               
               10-449, gnl|bosTau2|chr16 (34594086-34594528)
               

               
               10-449, gnl|Hg17|chr1 (6597082-6596640)
               

               
               10-449, gnl|Mm7|chr4 (150998546-150998988)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               eli (0.151814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               eli (0.151814)

	324-603, - strand, RNAz p=0.996052
	804-923, - strand, RNAz p=0.612074

	5-1055, gnl\|bosTau2\|chr18 (12043915-12042887)
	5-1055, gnl\|Hg17\|chr16 (83248004-83249054)
	5-1055, gnl\|Mm7\|chr8 (118505351-118506398)

	10-449, gnl\|bosTau2\|chr16 (34594086-34594528)
	10-449, gnl\|Hg17\|chr1 (6597082-6596640)
	10-449, gnl\|Mm7\|chr4 (150998546-150998988)