Ss1.1-relu1306b_e13.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GTGAGCGACCCTACCTGTGTGACTATCCAGACTGTGGAAAAGCCTTTGTTCAAAGTGGAC AGCTCAAAACCCATCAGCGTCTTCACACCGGAGAGAAACCTTTTGTTTGTTCAGAAAATG GCTGCCTAAGCAGATTCACCCACGCAAACCGCCACTGTCCGAAGCATCCTTATGCCAGGC TGAAGCGAGAGGAGCCTACAGATGCTCTCAGTAAGCCCCAGGCTGTGGACAACCAGGCTG CCGCTGAGTGGTTGGCAAAGTATTGGGAAACACGAGAGCAGCGTACCCCCACCTTAAAAG GAAAGCTGGTCCAGAAGGCCGATCAGGAGCAGCAAGACCCTCTGGAGTACCTTCAGTCTG ATGGGGAAGATGACGAAAAAAGCGGTGCCCAGCGGCGGCTCCAGGAGCAGCGGGAGCGCC TGCACGGAGCCCTGGCTCTCATCGAGCTCGCCAACCTGACTGGAGCGCCACTCCGTCAGT AGCCTGAACACTGACTCTCCCACTGTACAAAAGTACTGCCCGGCGTACTTAAAAAGTAGA TCCTTGGGCATAAGCTAAAGCACCTTATTTGCTTATCATAGGCTGCTATTCTGTAGAAAT TTATGAAGAATGTCATTGCCCCAGAAGTTGGGGTGAGAGAGAATTGCACTTTTTTTGTAC GGTCATGGATTTGTTGTAAAGTTTAAAGTATTTTGTAAATATGGGATTTCTAGTACAGGG TAGAATACTACATATTGTGGGAAGCTAGATTTTGCAAGTTTAAGGCATTCATTGGAAGCA GTTCTCACAGGAAGCACTTTCTGAGTAAGACACTTG |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GTGAGCGACCCTACCTGTGTGACTATCCAGACTGTGGAAAAGCCTTTGTTCAAAGTGGAC AGCTCAAAACCCATCAGCGTCTTCACACCGGAGAGAAACCTTTTGTTTGTTCAGAAAATG GCTGCCTAAGCAGATTCACCCACGCAAACCGCCACTGTCCGAAGCATCCTTATGCCAGGC TGAAGCGAGAGGAGCCTACAGATGCTCTCAGTAAGCCCCAGGCTGTGGACAACCAGGCTG CCGCTGAGTGGTTGGCAAAGTATTGGGAAACACGAGAGCAGCGTACCCCCACCTTAAAAG GAAAGCTGGTCCAGAAGGCCGATCAGGAGCAGCAAGACCCTCTGGAGTACCTTCAGTCTG ATGGGGAAGATGACGAAAAAAGCGGTGCCCAGCGGCGGCTCCAGGAGCAGCGGGAGCGCC TGCACGGAGCCCTGGCTCTCATCGAGCTCGCCAACCTGACTGGAGCGCCACTCCGTCAGT AGCCTGAACACTGACTCTCCCACTGTACAAAAGTACTGCCCGGCGTACTTAAAAAGTAGA TCCTTGGGCATAAGCTAAAGCACCTTATTTGCTTATCATAGGCTGCTATTCTGTAGAAAT TTATGAAGAATGTCATTGCCCCAGAAGTTGGGGTGAGAGAGAATTGCACTTTTTTTGTAC GGTCATGGATTTGTTGTAAAGTTTAAAGTATTTTGTAAATATGGGATTTCTAGTACAGGG TAGAATACTACATATTGTGGGAAGCTAGATTTTGCAAGTTTAAGGCATTCATTGGAAGCA GTTCTCACAGGAAGCACTTTCTGAGTAAGACACTTG |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
539-656, - strand, RNAz p=0.658443 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
539-656, - strand, RNAz p=0.658443 |
Aligned organism(s): 33 entry(ies) | More info |
Aligned organism(s): 33 entry(ies) | Help | Less info |
1-121, gnl|bosTau2|chr8 (45532499-45532619) | |
1-121, gnl|canFam2|chr1 (73535241-73535115) | |
1-121, gnl|danRer3|chrNA (200381117-200381240) | |
1-121, gnl|dasNov1|scaffold_3042 (27337-27211) | |
1-121, gnl|echTel1|scaffold_291622 (54078-53952) | |
1-121, gnl|galGal2|chrZ_random (14836371-14836245) | |
1-121, gnl|hg17|chr9 (96236656-96236782) | |
1-121, gnl|Hg17|chr9 (96236779-96236659) | |
1-121, gnl|loxAfr1|scaffold_28912 (10960-11086) | |
1-121, gnl|mm7|chr13 (61967528-61967654) | |
1-121, gnl|Mm7|chr13 (61967651-61967531) | |
1-121, gnl|monDom2|scaffold_19 (373799-373925) | |
1-121, gnl|oryCun1|scaffold_101632 (587-461) | |
1-121, gnl|panTro1|chrUn_random (30357768-30357642) | |
1-121, gnl|rheMac2|chr15 (108176748-108176874) | |
1-121, gnl|rn3|chr17 (6499989-6499863) | |
1-121, gnl|tetNig1|chr12 (9145707-9145582) | |
1-121, gnl|xenTro1|scaffold_842 (438322-438448) | |
260-816, gnl|bosTau2|chr8 (45536969-45537523) | |
260-816, gnl|canFam2|chr1 (73540073-73539728) | |
260-816, gnl|dasNov1|scaffold_3042 (31446-31099) | |
260-816, gnl|echTel1|scaffold_266491 (1406-1059) | |
260-816, gnl|hg17|chr9 (96229742-96230087) | |
260-816, gnl|Hg17|chr9 (96230296-96229741) | |
260-816, gnl|loxAfr1|scaffold_28912 (6766-7113) | |
260-816, gnl|mm7|chr13 (61958363-61958704) | |
260-816, gnl|Mm7|chr13 (61958913-61958362) | |
260-816, gnl|monDom2|scaffold_19 (369313-369663) | |
260-816, gnl|oryCun1|scaffold_101632 (7196-6850) | |
260-816, gnl|panTro1|chrUn_random (30364688-30364343) | |
260-816, gnl|rheMac2|chr15 (108169891-108170236) | |
260-816, gnl|rn3|chr17 (6509318-6508977) | |
260-816, gnl|xenTro1|scaffold_842 (435410-435803) |
Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-121, gnl|bosTau2|chr8 (45532499-45532619) | |
1-121, gnl|canFam2|chr1 (73535241-73535115) | |
1-121, gnl|danRer3|chrNA (200381117-200381240) | |
1-121, gnl|dasNov1|scaffold_3042 (27337-27211) | |
1-121, gnl|echTel1|scaffold_291622 (54078-53952) | |
1-121, gnl|galGal2|chrZ_random (14836371-14836245) | |
1-121, gnl|hg17|chr9 (96236656-96236782) | |
1-121, gnl|Hg17|chr9 (96236779-96236659) | |
1-121, gnl|loxAfr1|scaffold_28912 (10960-11086) | |
1-121, gnl|mm7|chr13 (61967528-61967654) | |
1-121, gnl|Mm7|chr13 (61967651-61967531) | |
1-121, gnl|monDom2|scaffold_19 (373799-373925) | |
1-121, gnl|oryCun1|scaffold_101632 (587-461) | |
1-121, gnl|panTro1|chrUn_random (30357768-30357642) | |
1-121, gnl|rheMac2|chr15 (108176748-108176874) | |
1-121, gnl|rn3|chr17 (6499989-6499863) | |
1-121, gnl|tetNig1|chr12 (9145707-9145582) | |
1-121, gnl|xenTro1|scaffold_842 (438322-438448) | |
260-816, gnl|bosTau2|chr8 (45536969-45537523) | |
260-816, gnl|canFam2|chr1 (73540073-73539728) | |
260-816, gnl|dasNov1|scaffold_3042 (31446-31099) | |
260-816, gnl|echTel1|scaffold_266491 (1406-1059) | |
260-816, gnl|hg17|chr9 (96229742-96230087) | |
260-816, gnl|Hg17|chr9 (96230296-96229741) | |
260-816, gnl|loxAfr1|scaffold_28912 (6766-7113) | |
260-816, gnl|mm7|chr13 (61958363-61958704) | |
260-816, gnl|Mm7|chr13 (61958913-61958362) | |
260-816, gnl|monDom2|scaffold_19 (369313-369663) | |
260-816, gnl|oryCun1|scaffold_101632 (7196-6850) | |
260-816, gnl|panTro1|chrUn_random (30364688-30364343) | |
260-816, gnl|rheMac2|chr15 (108169891-108170236) | |
260-816, gnl|rn3|chr17 (6509318-6508977) | |
260-816, gnl|xenTro1|scaffold_842 (435410-435803) |
Expressed library(ies): 3 entry(ies) | More info |
Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
elu (0.385356) | |
che (0.136314) | |
thg (0.126791) |