Non-Coding RNA Search

Ss1.1-relu1306b_g22.5

Sequence:


               
               TTTTTTTTTTTTTTTTTAGGCAGCTGCATTCCTTTATTAGGAGCTGGGGGTGGGGTGGGG
CATGGCGCTGGCCTGTCAGAGGCGCCTGAAGAAGAGCTTGGGGCCTTGGTCCAGGGTGCA
TGCTTTGGGTCCCAGCCGGCTGGGCAGCAGCTGGTGCGCGGCATCCCGGTCCTCAGCGGA
GAGGCGTCTGCTGCACAGCTGCAGCTCCTGCAGCTGCACCGCCACCTGGTCCCAGAGGCC
CAGGCCCAGGGGGCCCTGGACAGCACAGCCTGACAGGCCCAGGAAGCTGAGGCCTTGGGG
CCGTTCCTGGAGGGCAGACAGGAGCTCCTCCAGGCCGGCTCGGCTGACCTTGGGGTTGGC
GGACAGATCCAGTGAGACCAGCGAGGGGCACAGAGGGAGACACCTGCTCAGTTCTCTCAC
TGCCTGGTCGTCCAGGTGATTTGCCGACAGGCTCAGATGCTCCAGGGTGCAGCCTTCCTC
GGTCAGGTATCTGAGCACGGGCTCCAGGAGGCCTGGGTTGCCCTTGCTGGCCGCCACAGC
GCTCAGCTCCAGGCGCAGGAGGGTGTGGGCGGGCAGGCTGCGCAGGGCCTGGGCCAGGGC
GGTGGCGCCCAGGAAGTTGTAGGACAGGGACAGGGTCTGCAGGCACTTGGCATCTTGGAA
GGCACTGCCCAGGGCCGCTTGGTGGTTCAGGAAGAAGCTGGGGCCAAAGCCACAGGCCTG
GAGGTGCAGGGCGCTGAGCAAGGGGCAGGCCTGCAGGATGGAGGCCAGGGCCAGGCCACA
GCCATCCCCCAGGGGGTTCATGCTTAAGTCCAGCTCCTCCAAGTTCTGCAAGGCAGCCTG
CCCGGGGAGGCCTGCAGCAAGCTGGCGCAGGCCTTCAGGGCCCAGGTGGTTGGAGGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTAGGCAGCTGCATTCCTTTATTAGGAGCTGGGGGTGGGGTGGGG
CATGGCGCTGGCCTGTCAGAGGCGCCTGAAGAAGAGCTTGGGGCCTTGGTCCAGGGTGCA
TGCTTTGGGTCCCAGCCGGCTGGGCAGCAGCTGGTGCGCGGCATCCCGGTCCTCAGCGGA
GAGGCGTCTGCTGCACAGCTGCAGCTCCTGCAGCTGCACCGCCACCTGGTCCCAGAGGCC
CAGGCCCAGGGGGCCCTGGACAGCACAGCCTGACAGGCCCAGGAAGCTGAGGCCTTGGGG
CCGTTCCTGGAGGGCAGACAGGAGCTCCTCCAGGCCGGCTCGGCTGACCTTGGGGTTGGC
GGACAGATCCAGTGAGACCAGCGAGGGGCACAGAGGGAGACACCTGCTCAGTTCTCTCAC
TGCCTGGTCGTCCAGGTGATTTGCCGACAGGCTCAGATGCTCCAGGGTGCAGCCTTCCTC
GGTCAGGTATCTGAGCACGGGCTCCAGGAGGCCTGGGTTGCCCTTGCTGGCCGCCACAGC
GCTCAGCTCCAGGCGCAGGAGGGTGTGGGCGGGCAGGCTGCGCAGGGCCTGGGCCAGGGC
GGTGGCGCCCAGGAAGTTGTAGGACAGGGACAGGGTCTGCAGGCACTTGGCATCTTGGAA
GGCACTGCCCAGGGCCGCTTGGTGGTTCAGGAAGAAGCTGGGGCCAAAGCCACAGGCCTG
GAGGTGCAGGGCGCTGAGCAAGGGGCAGGCCTGCAGGATGGAGGCCAGGGCCAGGCCACA
GCCATCCCCCAGGGGGTTCATGCTTAAGTCCAGCTCCTCCAAGTTCTGCAAGGCAGCCTG
CCCGGGGAGGCCTGCAGCAAGCTGGCGCAGGCCTTCAGGGCCCAGGTGGTTGGAGGAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26378650|dbj|BAC25399.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26378650|dbj|BAC25399.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               149-324, - strand, RNAz p=0.999296
               

               
               656-828, + strand, RNAz p=0.955804

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               149-324, - strand, RNAz p=0.999296
               

               
               656-828, + strand, RNAz p=0.955804

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               32-324, gnl|bosTau2|chr14 (3325980-3325684)
               

               
               32-324, gnl|Hg17|chr8 (145625288-145625557)
               


               
               622-828, gnl|bosTau2|chr14 (3322952-3322748)
               

               
               622-828, gnl|Hg17|chr8 (145629742-145629953)
               

               
               622-828, gnl|Mm7|chr15 (76712997-76713203)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-324, gnl|bosTau2|chr14 (3325980-3325684)
               

               
               32-324, gnl|Hg17|chr8 (145625288-145625557)
               


               
               622-828, gnl|bosTau2|chr14 (3322952-3322748)
               

               
               622-828, gnl|Hg17|chr8 (145629742-145629953)
               

               
               622-828, gnl|Mm7|chr15 (76712997-76713203)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               fcc (0.197785)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               fcc (0.197785)
               

               
               nmm (0.132802)

	149-324, - strand, RNAz p=0.999296
	656-828, + strand, RNAz p=0.955804

	32-324, gnl\|bosTau2\|chr14 (3325980-3325684)
	32-324, gnl\|Hg17\|chr8 (145625288-145625557)

	622-828, gnl\|bosTau2\|chr14 (3322952-3322748)
	622-828, gnl\|Hg17\|chr8 (145629742-145629953)
	622-828, gnl\|Mm7\|chr15 (76712997-76713203)