Non-Coding RNA Search

Ss1.1-relu1306b_h17.5

Sequence:


               
               ATATTTAGCCTTTTTATATATGACTTTGGATTCTGTTGTTTGTATTTTAGCACAGTGTGT
GTATGCCTTCATTTAAATATATCGTGTGTGCATACATATATACATATATGTATGTGTGCA
TATATATATATAAATATATTTAAAAAGTATCAGAGTTCAGTTAAAGGAGATGGAGTCCTG
TGCCCCAGGAGAAAGACCACATCCTTGCTAATGGTGTTTGCCACAAGTGTTAGTGAGTCT
TCCCTATTACCTTTTTCCCTTCGGGATACTGAACAAAAGCAAAGCTTTCAAGTGTTTGCT
GTCCCCATGGCAGCTAAGTGAGGGTCTTAGAATGACTCCCTTGTGTTCTTCAAGCCGCAC
TTTGGGGCTTTCTCTGCAGTATTAGCCCCCCTTTTGCCCAGTGATGCTCCTGTCTGCGCC
TATATGTGTGTGACAGTCACTTTTGCATGCCTTTTGTATCTGGCTCCCAGCGTTTGGGGA
CAGGATGCTGGAACCAGAGCATTTCAGCTTGTCTGAGGCTTCTTTGCCAATTACAGGTCA
CTCCTATTTACCTGGTTTGTCTGCTTTCTTGCTTTTCTTTGCCTTCTCTTGGGAGAGGGA
GGGTTCCGGATTGCAGTTGAGGTGAGCTGCTGCTAGCTATAGCCTTTCCCCCTGCATGGC
CTTCTTAGAGCAGGACAAGTGGCATGTTATTTTACTAAGTTACCAAACATTGAAGGAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATTTAGCCTTTTTATATATGACTTTGGATTCTGTTGTTTGTATTTTAGCACAGTGTGT
GTATGCCTTCATTTAAATATATCGTGTGTGCATACATATATACATATATGTATGTGTGCA
TATATATATATAAATATATTTAAAAAGTATCAGAGTTCAGTTAAAGGAGATGGAGTCCTG
TGCCCCAGGAGAAAGACCACATCCTTGCTAATGGTGTTTGCCACAAGTGTTAGTGAGTCT
TCCCTATTACCTTTTTCCCTTCGGGATACTGAACAAAAGCAAAGCTTTCAAGTGTTTGCT
GTCCCCATGGCAGCTAAGTGAGGGTCTTAGAATGACTCCCTTGTGTTCTTCAAGCCGCAC
TTTGGGGCTTTCTCTGCAGTATTAGCCCCCCTTTTGCCCAGTGATGCTCCTGTCTGCGCC
TATATGTGTGTGACAGTCACTTTTGCATGCCTTTTGTATCTGGCTCCCAGCGTTTGGGGA
CAGGATGCTGGAACCAGAGCATTTCAGCTTGTCTGAGGCTTCTTTGCCAATTACAGGTCA
CTCCTATTTACCTGGTTTGTCTGCTTTCTTGCTTTTCTTTGCCTTCTCTTGGGAGAGGGA
GGGTTCCGGATTGCAGTTGAGGTGAGCTGCTGCTAGCTATAGCCTTTCCCCCTGCATGGC
CTTCTTAGAGCAGGACAAGTGGCATGTTATTTTACTAAGTTACCAAACATTGAAGGAGCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               32-179, - strand, RNAz p=1
               

               
               457-575, + strand, RNAz p=0.603283

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               32-179, - strand, RNAz p=1
               

               
               457-575, + strand, RNAz p=0.603283

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX648628, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX648628, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-715, gnl|bosTau2|chr22 (36827203-36826477)
               

               
               1-715, gnl|Hg17|chr3 (52265523-52264819)
               

               
               1-715, gnl|Mm7|chr9 (105919086-105919720)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-715, gnl|bosTau2|chr22 (36827203-36826477)
               

               
               1-715, gnl|Hg17|chr3 (52265523-52264819)
               

               
               1-715, gnl|Mm7|chr9 (105919086-105919720)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               elu (0.385356)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	32-179, - strand, RNAz p=1
	457-575, + strand, RNAz p=0.603283

	1-715, gnl\|bosTau2\|chr22 (36827203-36826477)
	1-715, gnl\|Hg17\|chr3 (52265523-52264819)
	1-715, gnl\|Mm7\|chr9 (105919086-105919720)

	elu (0.385356)
	fbs (0.175346)
	nco (0.161734)
	csp (0.161186)
	hyp (0.142837)
	cty (0.10408)
	ldo (0.0970026)