Ss1.1-relu1306b_m6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACAACAGAGTGAATCTGGACGTTTAAGCTTGGGAGCTTCCCGTGGGAGCAGTGTGGAG AGCTTGCCCCCCACTTCCGAAGGCAAGAGGATGAGTGCTGACATGTCTGAAATAGAAGCC AGGATTGCTGCAACCACAGGCAACGGGCAGTCAAGACGTAGATCCATCCAAGACTTGACT GTTACTGGAACAGAGCCTGGTCAGGTGAGCAGTAGGTCATCCAGTCCTAGCATCAGAATG ATCACTACCTCAGGACCAACCTCAGAAAAGCCAGCTCGAAGTCATCCATGGACCCCTGAT GATTCCACAGATACCAATGGATCAGATAATTCCATCCCAATGGCTTATCTTACACTGGAT CACCAACTACAGCCTCTAGCACCATGCCCAAACTCCAAAGAATCTATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACAACAGAGTGAATCTGGACGTTTAAGCTTGGGAGCTTCCCGTGGGAGCAGTGTGGAG AGCTTGCCCCCCACTTCCGAAGGCAAGAGGATGAGTGCTGACATGTCTGAAATAGAAGCC AGGATTGCTGCAACCACAGGCAACGGGCAGTCAAGACGTAGATCCATCCAAGACTTGACT GTTACTGGAACAGAGCCTGGTCAGGTGAGCAGTAGGTCATCCAGTCCTAGCATCAGAATG ATCACTACCTCAGGACCAACCTCAGAAAAGCCAGCTCGAAGTCATCCATGGACCCCTGAT GATTCCACAGATACCAATGGATCAGATAATTCCATCCCAATGGCTTATCTTACACTGGAT CACCAACTACAGCCTCTAGCACCATGCCCAAACTCCAAAGAATCTATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 26-143, - strand, RNAz p=0.812154 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 26-143, - strand, RNAz p=0.812154 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 5-143, gnl|bosTau2|chr9 (32514659-32514797) | |
| 5-143, gnl|canFam2|chr12 (52703416-52703528) | |
| 5-143, gnl|danRer3|chr20 (32447006-32446880) | |
| 5-143, gnl|dasNov1|scaffold_102372 (5485-5597) | |
| 5-143, gnl|echTel1|scaffold_312936 (1792-1680) | |
| 5-143, gnl|galGal2|chr3 (73446066-73445929) | |
| 5-143, gnl|hg17|chr6 (91313688-91313800) | |
| 5-143, gnl|Hg17|chr6 (91313832-91313694) | |
| 5-143, gnl|loxAfr1|scaffold_4830 (67260-67148) | |
| 5-143, gnl|mm7|chr4 (32270927-32270817) | |
| 5-143, gnl|Mm7|chr4 (32270783-32270921) | |
| 5-143, gnl|monDom2|scaffold_0 (137473306-137473193) | |
| 5-143, gnl|oryCun1|scaffold_214258 (78248-78143) | |
| 5-143, gnl|panTro1|chr5 (93042213-93042325) | |
| 5-143, gnl|rheMac2|chr4 (86440569-86440681) | |
| 5-143, gnl|rn3|chr5 (48282035-48281926) | |
| 5-143, gnl|tetNig1|chrUn_random (24204569-24204695) | |
| 5-143, gnl|xenTro1|scaffold_711 (82315-82446) | |
| 202-316, gnl|bosTau2|chr9 (32533913-32534028) | |
| 202-316, gnl|Hg17|chr6 (91290226-91290111) | |
| 202-316, gnl|Mm7|chr4 (32288714-32288829) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-143, gnl|bosTau2|chr9 (32514659-32514797) | |
| 5-143, gnl|canFam2|chr12 (52703416-52703528) | |
| 5-143, gnl|danRer3|chr20 (32447006-32446880) | |
| 5-143, gnl|dasNov1|scaffold_102372 (5485-5597) | |
| 5-143, gnl|echTel1|scaffold_312936 (1792-1680) | |
| 5-143, gnl|galGal2|chr3 (73446066-73445929) | |
| 5-143, gnl|hg17|chr6 (91313688-91313800) | |
| 5-143, gnl|Hg17|chr6 (91313832-91313694) | |
| 5-143, gnl|loxAfr1|scaffold_4830 (67260-67148) | |
| 5-143, gnl|mm7|chr4 (32270927-32270817) | |
| 5-143, gnl|Mm7|chr4 (32270783-32270921) | |
| 5-143, gnl|monDom2|scaffold_0 (137473306-137473193) | |
| 5-143, gnl|oryCun1|scaffold_214258 (78248-78143) | |
| 5-143, gnl|panTro1|chr5 (93042213-93042325) | |
| 5-143, gnl|rheMac2|chr4 (86440569-86440681) | |
| 5-143, gnl|rn3|chr5 (48282035-48281926) | |
| 5-143, gnl|tetNig1|chrUn_random (24204569-24204695) | |
| 5-143, gnl|xenTro1|scaffold_711 (82315-82446) | |
| 202-316, gnl|bosTau2|chr9 (32533913-32534028) | |
| 202-316, gnl|Hg17|chr6 (91290226-91290111) | |
| 202-316, gnl|Mm7|chr4 (32288714-32288829) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| elu (0.385356) | |
| ill (0.351185) | |
| nca (0.136874) | |
| cbl (0.114797) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| ill (0.351185) | |
| nca (0.136874) | |
| cbl (0.114797) |