Non-Coding RNA Search

Ss1.1-relu1309b_a16.5

Sequence:


               
               GAGAGAGCAAGATGGGTCACCAGCAGCTCTACTGGAGCCATCCAAGAAAATTCGGTCAGG
GTTCTCGCTCTTGGTGAGAAACAGAATGTCGCTTCAGGGAAGGGTTCCTCTGGGGCGCGA
CGCTGCTTGAAATAGAATGGCGGAGCCCCGCAGGTTTGCGCGTGGGGGGAGACGGAATCG
GAGCTTGATTGCCGCCATTACAGGCCTCTCATGGGTCTTTGGTGACCACCGAGAGAGCAA
GATGGGTCACCAGCAGCTCTACTGGAGCCATCCAAGAAAATTCGGTCAGGGTTCTCGCTC
TTGCCGAGTCTGCTCAAACCGGCACGGTCTGATCCGGAAATACGGCCTCAATATGTGCCG
CCAGTGCTTCCGCCAGTACGCGAAGGATATTGGCTTCATCAAGTTGGACTAAGCTTCCTT
GAATGGGTCATCCAGGACATCCACCTTATGCAGAAACAATGTTAGTGCTTTGTATATAAA
ATAAACATTTAAAAATACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGAGCAAGATGGGTCACCAGCAGCTCTACTGGAGCCATCCAAGAAAATTCGGTCAGG
GTTCTCGCTCTTGGTGAGAAACAGAATGTCGCTTCAGGGAAGGGTTCCTCTGGGGCGCGA
CGCTGCTTGAAATAGAATGGCGGAGCCCCGCAGGTTTGCGCGTGGGGGGAGACGGAATCG
GAGCTTGATTGCCGCCATTACAGGCCTCTCATGGGTCTTTGGTGACCACCGAGAGAGCAA
GATGGGTCACCAGCAGCTCTACTGGAGCCATCCAAGAAAATTCGGTCAGGGTTCTCGCTC
TTGCCGAGTCTGCTCAAACCGGCACGGTCTGATCCGGAAATACGGCCTCAATATGTGCCG
CCAGTGCTTCCGCCAGTACGCGAAGGATATTGGCTTCATCAAGTTGGACTAAGCTTCCTT
GAATGGGTCATCCAGGACATCCACCTTATGCAGAAACAATGTTAGTGCTTTGTATATAAA
ATAAACATTTAAAAATACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62857725|ref|NP_001016766.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62857725|ref|NP_001016766.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               217-524, gnl|bosTau2|chr28 (23171493-23171787)
               

               
               217-524, gnl|Hg17|chr3 (197751689-197751997)
               

               
               217-524, gnl|Mm7|chr2 (172302369-172302080)
               


               
               229-511, gnl|bosTau2|chr10 (16482390-16482105)
               

               
               229-511, gnl|Hg17|chr3 (197751700-197751984)
               

               
               229-511, gnl|Mm7|chr2 (172302358-172302076)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               217-524, gnl|bosTau2|chr28 (23171493-23171787)
               

               
               217-524, gnl|Hg17|chr3 (197751689-197751997)
               

               
               217-524, gnl|Mm7|chr2 (172302369-172302080)
               


               
               229-511, gnl|bosTau2|chr10 (16482390-16482105)
               

               
               229-511, gnl|Hg17|chr3 (197751700-197751984)
               

               
               229-511, gnl|Mm7|chr2 (172302358-172302076)

Expressed library(ies): 60 entry(ies)

More info

Expressed library(ies): 60 entry(ies)

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               fce (3.53069)
               

               
               elu (3.46821)
               

               
               eje (3.45918)
               

               
               amn (3.34169)
               

               
               ese (3.16256)
               

               
               nje (3.15248)
               

               
               nca (3.1481)
               

               
               pty (3.13972)
               

               
               mcp (3.07167)
               

               
               nms (2.78015)
               

               
               lnt (2.70386)
               

               
               jca (2.62108)
               

               
               fty (2.46175)
               

               
               fli (2.23169)
               

               
               nep (2.2071)
               

               
               jej (2.07736)
               

               
               ece (2.06375)
               

               
               med (1.86003)
               

               
               eru (1.80072)
               

               
               nmm (1.72643)
               

               
               nlu (1.72513)
               

               
               mas (1.68244)
               

               
               nco (1.61734)
               

               
               ill (1.58033)
               

               
               col (1.56006)
               

               
               ecc (1.49546)
               

               
               ebs (1.41961)
               

               
               eye (1.36402)
               

               
               fbs (1.05208)
               

               
               nbm (0.993246)
               

               
               hlv (0.974795)
               

               
               eli (0.910885)
               

               
               cag (0.907167)
               

               
               ton (0.877501)
               

               
               hyp (0.714184)
               

               
               eep (0.61282)
               

               
               cga (0.558191)
               

               
               ute (0.531138)
               

               
               fhi (0.508733)
               

               
               cje (0.495704)
               

               
               cli (0.458435)
               

               
               cov (0.396458)
               

               
               cmu (0.372787)
               

               
               sag (0.36543)
               

               
               sto (0.359648)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               lyg (0.266205)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               clu (0.119646)

Expressed library(ies): 60 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (3.53069)
               

               
               elu (3.46821)
               

               
               eje (3.45918)
               

               
               amn (3.34169)
               

               
               ese (3.16256)
               

               
               nje (3.15248)
               

               
               nca (3.1481)
               

               
               pty (3.13972)
               

               
               mcp (3.07167)
               

               
               nms (2.78015)
               

               
               lnt (2.70386)
               

               
               jca (2.62108)
               

               
               fty (2.46175)
               

               
               fli (2.23169)
               

               
               nep (2.2071)
               

               
               jej (2.07736)
               

               
               ece (2.06375)
               

               
               med (1.86003)
               

               
               eru (1.80072)
               

               
               nmm (1.72643)
               

               
               nlu (1.72513)
               

               
               mas (1.68244)
               

               
               nco (1.61734)
               

               
               ill (1.58033)
               

               
               col (1.56006)
               

               
               ecc (1.49546)
               

               
               ebs (1.41961)
               

               
               eye (1.36402)
               

               
               fbs (1.05208)
               

               
               nbm (0.993246)
               

               
               hlv (0.974795)
               

               
               eli (0.910885)
               

               
               cag (0.907167)
               

               
               ton (0.877501)
               

               
               hyp (0.714184)
               

               
               eep (0.61282)
               

               
               cga (0.558191)
               

               
               ute (0.531138)
               

               
               fhi (0.508733)
               

               
               cje (0.495704)
               

               
               cli (0.458435)
               

               
               cov (0.396458)
               

               
               cmu (0.372787)
               

               
               sag (0.36543)
               

               
               sto (0.359648)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               lyg (0.266205)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               clu (0.119646)

	217-524, gnl\|bosTau2\|chr28 (23171493-23171787)
	217-524, gnl\|Hg17\|chr3 (197751689-197751997)
	217-524, gnl\|Mm7\|chr2 (172302369-172302080)

	229-511, gnl\|bosTau2\|chr10 (16482390-16482105)
	229-511, gnl\|Hg17\|chr3 (197751700-197751984)
	229-511, gnl\|Mm7\|chr2 (172302358-172302076)

	fce (3.53069)
	elu (3.46821)
	eje (3.45918)
	amn (3.34169)
	ese (3.16256)
	nje (3.15248)
	nca (3.1481)
	pty (3.13972)
	mcp (3.07167)
	nms (2.78015)
	lnt (2.70386)
	jca (2.62108)
	fty (2.46175)
	fli (2.23169)
	nep (2.2071)
	jej (2.07736)
	ece (2.06375)
	med (1.86003)
	eru (1.80072)
	nmm (1.72643)
	nlu (1.72513)
	mas (1.68244)
	nco (1.61734)
	ill (1.58033)
	col (1.56006)
	ecc (1.49546)
	ebs (1.41961)
	eye (1.36402)
	fbs (1.05208)
	nbm (0.993246)
	hlv (0.974795)
	eli (0.910885)
	cag (0.907167)
	ton (0.877501)
	hyp (0.714184)
	eep (0.61282)
	cga (0.558191)
	ute (0.531138)
	fhi (0.508733)
	cje (0.495704)
	cli (0.458435)
	cov (0.396458)
	cmu (0.372787)
	sag (0.36543)
	sto (0.359648)
	fco (0.314416)
	bfe (0.299715)
	lyg (0.266205)
	cly (0.241284)
	cbe (0.239234)
	fcc (0.197785)
	sin (0.174948)
	spl (0.143184)
	csk (0.140746)
	cst (0.140036)
	pla (0.133672)
	kid (0.129735)
	cbr (0.127975)
	thg (0.126791)
	clu (0.119646)