Ss1.1-relu1310b_o16.5
|
TAGAAATATGGGGGCTATCTTGTTTCATTGTGGGGGTGGGGCAAGAGGAGAGCAAACACA
GGATGACCCTGTTTAAGGAATCTTAGCATGGCCAACAGGGATGTTTCCAGAACATTACCA
GGAGATGCACGCCTTGGGGGTTTCTACTGGGGAGGCTGTCATGAACTTTGAACTCCAAAG
CCTAGACAGGGAAAAGTGTCAGACATGTGGAAAAGAAATCAAGCCTTTTTTTTCTTTTTT
TTTTTTTTTTTGCTATTGCAAGACACATCAATAGAAACCATGCCTTTCAGAACAAAACAT
AAATGCAATGATTGTGTGAGATGTGAGCAACTGGAAGCATTCCAGCACAATAAGGATTTT
TTAATATATTTGTTCTTTTTAAATGTACATGTTAACAAAAGGGGGGGCTCATATTATGGA
CGCACTTCATGAATGGGAATTTGCTAAGAATTGTGAATAGGTATGAATCAGAGAAATATG
TGAATGAAAGGCAGCTGTACAGGCACTGCACCCTGGAGAGTTGTACACATGTTGAAATGT
AATCTGGGCTTACCTGATCCGTTTGGAGTGGATGTTAATGCTGGGTCTGTTCGCACTTGG
AACCATGTGAGTCGGGTTGCCAGCCTCGCAGATACAATCAGTCCTGTTCCCCCAGACATC
AGGAACTTCTCTGGAGTGGCAGAGTCTTATCACGGAAGGCAGCCACCATTTCACTGAAAC
AACAGTTCACAGCATTGGATTCTTTTTTGCATTAACTCTTTATATACTCAGTACTCTCAG
TGATATCCAGTAATACTTTTTATTAATAGTTACAGGCTTGTTGGTCCAGTGGGATTTGGG
TAGGGGGAAAAAAAGCTACCTTCTAAAACGGATCAATAGTCAGAACCAAAATAATACTGC
ATGTTCTATAATCACAAGGAAATCAAATGATCCTGTAATGATTCCAGTTAGTCATAACTA
CATTAGCAGTGCTAATTTCATTTTAGAAATGGTGACTTCTGTGGTTTTTCTAGCATTTGT
CTCTAACAAATG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TAGAAATATGGGGGCTATCTTGTTTCATTGTGGGGGTGGGGCAAGAGGAGAGCAAACACA
GGATGACCCTGTTTAAGGAATCTTAGCATGGCCAACAGGGATGTTTCCAGAACATTACCA
GGAGATGCACGCCTTGGGGGTTTCTACTGGGGAGGCTGTCATGAACTTTGAACTCCAAAG
CCTAGACAGGGAAAAGTGTCAGACATGTGGAAAAGAAATCAAGCCTTTTTTTTCTTTTTT
TTTTTTTTTTTGCTATTGCAAGACACATCAATAGAAACCATGCCTTTCAGAACAAAACAT
AAATGCAATGATTGTGTGAGATGTGAGCAACTGGAAGCATTCCAGCACAATAAGGATTTT
TTAATATATTTGTTCTTTTTAAATGTACATGTTAACAAAAGGGGGGGCTCATATTATGGA
CGCACTTCATGAATGGGAATTTGCTAAGAATTGTGAATAGGTATGAATCAGAGAAATATG
TGAATGAAAGGCAGCTGTACAGGCACTGCACCCTGGAGAGTTGTACACATGTTGAAATGT
AATCTGGGCTTACCTGATCCGTTTGGAGTGGATGTTAATGCTGGGTCTGTTCGCACTTGG
AACCATGTGAGTCGGGTTGCCAGCCTCGCAGATACAATCAGTCCTGTTCCCCCAGACATC
AGGAACTTCTCTGGAGTGGCAGAGTCTTATCACGGAAGGCAGCCACCATTTCACTGAAAC
AACAGTTCACAGCATTGGATTCTTTTTTGCATTAACTCTTTATATACTCAGTACTCTCAG
TGATATCCAGTAATACTTTTTATTAATAGTTACAGGCTTGTTGGTCCAGTGGGATTTGGG
TAGGGGGAAAAAAAGCTACCTTCTAAAACGGATCAATAGTCAGAACCAAAATAATACTGC
ATGTTCTATAATCACAAGGAAATCAAATGATCCTGTAATGATTCCAGTTAGTCATAACTA
CATTAGCAGTGCTAATTTCATTTTAGAAATGGTGACTTCTGTGGTTTTTCTAGCATTTGT
CTCTAACAAATG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
115-615, gnl|bosTau2|chr7 (67400622-67401114) |
|
115-615, gnl|canFam2|chr3 (7427700-7426209) |
|
115-615, gnl|dasNov1|scaffold_20 (44266-45686) |
|
115-615, gnl|echTel1|scaffold_276831 (38351-39774) |
|
115-615, gnl|galGal2|chr10_random (3786986-3785741) |
|
115-615, gnl|hg17|chr5 (106742471-106743922) |
|
115-615, gnl|Hg17|chr5 (106743280-106742787) |
|
115-615, gnl|loxAfr1|scaffold_1281 (84111-82678) |
|
115-615, gnl|mm7|chr17 (60812061-60813493) |
|
115-615, gnl|Mm7|chr17 (60812857-60812391) |
|
115-615, gnl|monDom2|scaffold_27 (10456664-10458079) |
|
115-615, gnl|oryCun1|scaffold_201167 (334873-336324) |
|
115-615, gnl|panTro1|chr4 (112636729-112638182) |
|
115-615, gnl|rheMac2|chr6 (103691462-103692915) |
|
115-615, gnl|rn3|chr9 (101434772-101436214) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
115-615, gnl|bosTau2|chr7 (67400622-67401114) |
|
115-615, gnl|canFam2|chr3 (7427700-7426209) |
|
115-615, gnl|dasNov1|scaffold_20 (44266-45686) |
|
115-615, gnl|echTel1|scaffold_276831 (38351-39774) |
|
115-615, gnl|galGal2|chr10_random (3786986-3785741) |
|
115-615, gnl|hg17|chr5 (106742471-106743922) |
|
115-615, gnl|Hg17|chr5 (106743280-106742787) |
|
115-615, gnl|loxAfr1|scaffold_1281 (84111-82678) |
|
115-615, gnl|mm7|chr17 (60812061-60813493) |
|
115-615, gnl|Mm7|chr17 (60812857-60812391) |
|
115-615, gnl|monDom2|scaffold_27 (10456664-10458079) |
|
115-615, gnl|oryCun1|scaffold_201167 (334873-336324) |
|
115-615, gnl|panTro1|chr4 (112636729-112638182) |
|
115-615, gnl|rheMac2|chr6 (103691462-103692915) |
|
115-615, gnl|rn3|chr9 (101434772-101436214) |
|
elu (0.385356) |
|
fat (0.147427) |
|
lin (0.145603) |
|
spl (0.143184) |
|
csk (0.140746) |
|
ret (0.128733) |
|
sug (0.127291) |
|
elu (0.385356) |
|
fat (0.147427) |
|
lin (0.145603) |
|
spl (0.143184) |
|
csk (0.140746) |
|
ret (0.128733) |
|
sug (0.127291) |
