Non-Coding RNA Search

Ss1.1-relu1314b_j6.5

Sequence:


               
               CACATAATTCGCATAAAGGGCCCCATGAGGGTGTTTCTTTCCCCTTTTTGTTTTTCCTTT
TTCCCCCCCGTTTTTGTTTGGTTTGGTTTTGTTTTGGGTGGGGGGTGGGAAGTTTGGTTT
TTGAGTCCTCTGAACACACTTGGGTGCGGAAATGCAGTACTGTAAGGAAGAGGGACCTCC
CGCTCACACCGACATCACCTTCAGCTGTATGGAAGGGACGGCTGTATTGGAGTTTGTAAG
GCACAGTAAGCATGCTACGTGGCGGGATCAGAACTCTCCTGTCTGAACCTACTGAGGAGC
AAAGCAGCAATTACCTGGGATCCTGTGGGTCTCCCGTTGTCGAGGCCACAGTGAGATAGT
GATGGAACGTGACTGGTCTCCTAACCAAGGTGCACTGAGAAGCAATCAACGGGTCAGTCA
TGGCCAGTCCTGGGGAGGTCTGAGTGGTGGTCTTTGGGATAACCTTTGGCCTTATGGATT
TGGACTCGAAATTAGAAGAGCCTACCATTTCAGATGCAATCACTTTTGGACACGCTTTTG
CAGACAGTCCTTAATGCTGAAAACACAGAGAATGGGTAATTCAAGAGGCCTTTCTTTTAA
AATAGACTTTTGTGACCCACTAATTGTAAGGTATTGCAAGGTCACTTTGCGTGTGTCATA
AAGTTGACTTCCTTATTGGTTGAAGGTCACAGAAGTAGTGGTTTGCTTTGATGGAAATAG
CTACAGCTGTGTCCCTTCCTGCTTTTTACTTTTTCTTTTGCTTTTTCTCGGCACGTGGTA
TCTCCACCATTTCTTCTGCACAAAGATGTCTTCTGTTCATCCTGAACATTTTTAAAAAAT
GCAGAATTTTATGTGACTGCTTTTTTGCCTCACAATTATGCTGTGAATTTTACAAAAATT
TATTTTCTTTTTTGATAATTTATTGTACCAAAGCTGTTTTTATAGCACATAGATGTCTGT
AACCAATAATGTAGCAGTTCTGCACTTTGACACAAGGTGTAACTAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACATAATTCGCATAAAGGGCCCCATGAGGGTGTTTCTTTCCCCTTTTTGTTTTTCCTTT
TTCCCCCCCGTTTTTGTTTGGTTTGGTTTTGTTTTGGGTGGGGGGTGGGAAGTTTGGTTT
TTGAGTCCTCTGAACACACTTGGGTGCGGAAATGCAGTACTGTAAGGAAGAGGGACCTCC
CGCTCACACCGACATCACCTTCAGCTGTATGGAAGGGACGGCTGTATTGGAGTTTGTAAG
GCACAGTAAGCATGCTACGTGGCGGGATCAGAACTCTCCTGTCTGAACCTACTGAGGAGC
AAAGCAGCAATTACCTGGGATCCTGTGGGTCTCCCGTTGTCGAGGCCACAGTGAGATAGT
GATGGAACGTGACTGGTCTCCTAACCAAGGTGCACTGAGAAGCAATCAACGGGTCAGTCA
TGGCCAGTCCTGGGGAGGTCTGAGTGGTGGTCTTTGGGATAACCTTTGGCCTTATGGATT
TGGACTCGAAATTAGAAGAGCCTACCATTTCAGATGCAATCACTTTTGGACACGCTTTTG
CAGACAGTCCTTAATGCTGAAAACACAGAGAATGGGTAATTCAAGAGGCCTTTCTTTTAA
AATAGACTTTTGTGACCCACTAATTGTAAGGTATTGCAAGGTCACTTTGCGTGTGTCATA
AAGTTGACTTCCTTATTGGTTGAAGGTCACAGAAGTAGTGGTTTGCTTTGATGGAAATAG
CTACAGCTGTGTCCCTTCCTGCTTTTTACTTTTTCTTTTGCTTTTTCTCGGCACGTGGTA
TCTCCACCATTTCTTCTGCACAAAGATGTCTTCTGTTCATCCTGAACATTTTTAAAAAAT
GCAGAATTTTATGTGACTGCTTTTTTGCCTCACAATTATGCTGTGAATTTTACAAAAATT
TATTTTCTTTTTTGATAATTTATTGTACCAAAGCTGTTTTTATAGCACATAGATGTCTGT
AACCAATAATGTAGCAGTTCTGCACTTTGACACAAGGTGTAACTAGAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               578-893, - strand, RNAz p=0.995182

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               578-893, - strand, RNAz p=0.995182

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               578-893, ILLUMIGEN_MCQ_7353 Katze_MMBR Macaca mulatta cDNA clone IBIUW 
(gb|CO645084.1|), blast E-value=0, identity=100% 
               

               
               578-831, LIB30320_044_H03_SP6_1 LIB30320 Canis familiaris cDNA clone 
(gb|DN265646.1|), blast E-value=7e-27, identity=100% 
               

               
               578-821, LIB30320_016_C01_SP6_1 LIB30320 Canis familiaris cDNA clone 
(gb|DN267180.1|), blast E-value=6e-21, identity=100% 
               

               
               578-858, 182288 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', 
(gb|DY751563.1|), blast E-value=5.00264e-43, identity=100% 
               

               
               578-893, 173138 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', 
(gb|DY759119.1|), blast E-value=0, identity=100% 
               

               
               578-890, 173137 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', 
(gb|DY759121.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               578-893, ILLUMIGEN_MCQ_7353 Katze_MMBR Macaca mulatta cDNA clone IBIUW 
(gb|CO645084.1|), blast E-value=0, identity=100% 
               

               
               578-831, LIB30320_044_H03_SP6_1 LIB30320 Canis familiaris cDNA clone 
(gb|DN265646.1|), blast E-value=7e-27, identity=100% 
               

               
               578-821, LIB30320_016_C01_SP6_1 LIB30320 Canis familiaris cDNA clone 
(gb|DN267180.1|), blast E-value=6e-21, identity=100% 
               

               
               578-858, 182288 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', 
(gb|DY751563.1|), blast E-value=5.00264e-43, identity=100% 
               

               
               578-893, 173138 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', 
(gb|DY759119.1|), blast E-value=0, identity=100% 
               

               
               578-890, 173137 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', 
(gb|DY759121.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1008, gnl|bosTau2|chr1 (100343434-100344456)
               

               
               1-1008, gnl|Hg17|chr21 (37807065-37808075)
               

               
               1-1008, gnl|Mm7|chr16 (94998493-94999503)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1008, gnl|bosTau2|chr1 (100343434-100344456)
               

               
               1-1008, gnl|Hg17|chr21 (37807065-37808075)
               

               
               1-1008, gnl|Mm7|chr16 (94998493-94999503)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               elu (0.385356)
               

               
               cty (0.20816)
               

               
               spl (0.143184)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cty (0.20816)
               

               
               spl (0.143184)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)

	578-893, ILLUMIGEN_MCQ_7353 Katze_MMBR Macaca mulatta cDNA clone IBIUW (gb\|CO645084.1\|), blast E-value=0, identity=100%
	578-831, LIB30320_044_H03_SP6_1 LIB30320 Canis familiaris cDNA clone (gb\|DN265646.1\|), blast E-value=7e-27, identity=100%
	578-821, LIB30320_016_C01_SP6_1 LIB30320 Canis familiaris cDNA clone (gb\|DN267180.1\|), blast E-value=6e-21, identity=100%
	578-858, 182288 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', (gb\|DY751563.1\|), blast E-value=5.00264e-43, identity=100%
	578-893, 173138 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', (gb\|DY759119.1\|), blast E-value=0, identity=100%
	578-890, 173137 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', (gb\|DY759121.1\|), blast E-value=0, identity=100%

	1-1008, gnl\|bosTau2\|chr1 (100343434-100344456)
	1-1008, gnl\|Hg17\|chr21 (37807065-37808075)
	1-1008, gnl\|Mm7\|chr16 (94998493-94999503)

	elu (0.385356)
	cty (0.20816)
	spl (0.143184)
	eru (0.120048)
	clu (0.119646)
	cbl (0.114797)